RNA id: XM_036966202.1


Basic Information

Item Value
RNA id XM_036966202.1
length 1435
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC118936612
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36235498 ~ 36240339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCCTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGACGTCCGATATGACAAGTGTTCATCTCTTCTTCATGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTCGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGCACTGATGGTCAGAGGCCGTCCTTTATAAAGCACTTCTGTCTTTGGATTTATAATGTAGCCTTTTGGGAGCTTCGGTTGGAATTGAACACAATGCAATTGTCTCAAAATTACTCTTTCCTCAGTTTTGAATCTCTCGTAATACACAGATAAATATTGTAAATGTACCCTTCTTTGCTGATTCTCCACATATATTCAAAGAAATTGAGAGCAGTCTGCTACTTAAGATTCACATGGATTACCCCGCTGcttatttcaaaataatattaCTGTTGAAAGTAAAGCTTACTCTAACTTAACCAGTATGAGGGGTGAGAAATGAAATAAGGATGTTATTGGTTTCTTTTTTTCTGAATCTTAAAATTTGTTTTACAATTTTGGGAAGAAAATTGTCTGTATGTCTGCATATGTCTTGCAGTGTAAAATGATTGCAGCTCTGTTTCTACTTCTCTCAGGGCAGAGTGCCCACAGTCTtatctctgggcagccaggtctgCCTGTGACCGCAGATCACTACTAGATTTTTATAGGTAACATAATGAACTTAGGTCTGGTCCCTATGGCCAGGCTGTGTTCACGGAGTCTGCACATTGTCAATTCAGAATTTTCCTTAGTCACTGTGAACATATGTCTGTAGACCAAACAGCATTAAAGTTTGCTGTGGGTTTTGTCTTTCTAAAAggtgatattttttattttagattcGATGACGGTTTGGTTGGTTAACAACAACCGGAACTTGGCTTAGATTGTTGTCGGACTttaatcaaatattattttaaggggtggatcagctgTATTGCAGAAATAAATTCATtgcaaatcctacaatgtgattttctgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438946 lncRNA downstream 38066 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 77210 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 77709 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 157795 36077476 ~ 36077703 (-) True G2132934
TU2438864 lncRNA downstream 193672 36041534 ~ 36041826 (-) True G2132923
TU2438985 lncRNA upstream 10037 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 17398 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 26905 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 72430 36312769 ~ 36313075 (-) True G2133027
TU2439030 lncRNA upstream 97969 36338308 ~ 36338554 (-) True G2133048
XM_036966204.1 mRNA downstream 3338 36230055 ~ 36232160 (-) False LOC118944824
XM_036966205.1 mRNA downstream 3338 36230518 ~ 36232160 (-) True LOC118944824
XM_036966173.1 mRNA downstream 16824 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA downstream 16824 36197798 ~ 36218674 (-) True fastk
XM_021590064.2 mRNA downstream 170926 36053418 ~ 36064572 (-) True LOC110509100
XM_021590068.2 mRNA upstream 3322 36243661 ~ 36245981 (-) True LOC110509104
XM_036967106.1 mRNA upstream 98746 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 109058 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 150935 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 162230 36402569 ~ 36419771 (-) False faim2a
TU2438948 other downstream 10119 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 210297 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 210297 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 217666 36005489 ~ 36017832 (-) False lyrm4
TU2438987 other upstream 22663 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 316161 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1526379 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1887790 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2279232 38519571 ~ 38526920 (-) True G2135034

Expression Profile