RNA id: TU2432829


Basic Information

Item Value
RNA id TU2432829
length 3777
lncRNA type sense_over
GC content 0.42
exon number 4
gene id G2127817
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30995158 ~ 31136091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTCACGAAGCGGACGAGGGAGTGTAGCCTAGTCATACGGGCAAGTAGGTGGAGAAAATAAAATAATCAACGATATTTACGATAAGCGACAGCCAACACCGTGAGAAAGTGAAAGTGGCACCAGTTGGCAGTCCCAAAGACCGTCGGTTGATCTGCTTTTCATAGCTTTCAACTGTTATTGAGTGAGGTCTCCTCCTAGTTGGTGACGGATACAGTAGGCGACACGGGGAGACCAGCTTGTATTGCCCTCGCCAGATTTCATAAGATTAGATTTCAAAATATTTGACGAGTGGTGTGGAGGCCAAGATGTCATCGAAGATGCCAAGCTCTAACAACATAACTCAGGCCAGAAGGACAGTACAACAGCTAAAGATAGAGGCCAGTATTGAGAGGATAAAGGTATCCAAGGCCTCAGCGGACCTCATGCACTACTGTGGCGAACATGCCAAGTACGACCCTCTGCTCATGGGCATCCCTGCCTCAGAGAACCCCTTCAAGGACAAAAAGCCTTGCGCTATATTGTAATGACCCCTTTATGTATCTGTTGGCTTTTTAATATTCCTGTATGTCTTTTTTTTCTACTCATCCACCCGTCATGCCTTAAAGCCTATAACCTTACCCTTTAATGAAAATGTTGTATTTTATCACTCACGTTGAACATATTTACAGACATAACATACAATGCATTGATACAGTACATCGGTCAAATATACCTTGGGACACTGACTGTTAATGTGTGTCTGATTTAGCTCAGTGGATTTAGCCGATGTTTCCGACCATCCCTTTAACGAGTCTGTTTTAATCGTATCTTCTGTCATTTGTATTATAATGACCTAATTTAATATATTTCAGGCTTTCGAGTCATGGTTGGGacatgtggctgtattgtcttctTCCCATTGACTCATCATTGACCCGTGCAGCGTTCACGTGCTAGTTGGAACTAGAAAACTCAGACATGTttgacttgctaactggttgaacaGGGCAtgtgtataactacaaccagttagcaaaTCAAACATGTCAGAGTaacctagttccgactagcatgtGAACGCAGCTTCATGCTGTTTATTAATAACTTACTGGTTCAGCAGGATGGCATCTGGACTGTCAGTGAGCAATGAAGGAAGTAGACCCAGGGACAAATATTTTCTAAAATAGACATCATCAGAGCCCTCAACCTTCCATTAATGTAAAGAGTATAAGTTTTTGATTAGTGCTGAGGATATTTTAACTCACTGCCAATTTTCGGATGGGAAACTGCAGTGTACAGCTAAGACAGGTAATTCACAACCTCAGTATACAGCACTCCACCCAGCCATTTAACCCAGGTGTTACATAACAGAACACTGTGAGCCAAGTCACCTTAACATATTTACGATAGTGATCATGTAATCAATGTATAGGTTGGTATTTTAAAGAGGGGGTTCAGGTACAAGTATTCTGTTGGGAGAGACCATAGGAGGTGCACCAGCTTGGCACATGGGTTGTTATTAATGGTGTAATAAATTATTTTCACTCCCAACTATGTGCACTATACCCTGTATTTGAGTAGACTGGTCTGATAGACTAgaagtaacatagtaaacgtacaTCCGAGACACtcaaattacactgaacaaaaatataaatgcaacatgtgaagggctggtcccatgtttcatgagccggAAAAAAAATCCCAGAGATATTTCCCTACGCCCAAAAAATGAATTTCTCTTAAATTACGTGCAAAAAATTGTTTACAcccttgttagtgagcatgtatcctttgtcaagataatcaatctacttgacaggtgtggcatttcaagaagctcattaaactgcatgatcattacacaggtgcaccttgtgctggggacaatcaaaggccactctaaaatgtgcagtttggtcacGCAACGCAATGGCACaattctcaagttttgagggagcgtgcaattgacatgctgactgcaggaatgtccaccagagctgttacctaccataagccacctcccacatccttttagagaatttggcagtacgtccaaccggtctcacaaccggagaccacttgtaaccacaccagcccaggacctccacatctggtttcttcatctgcgggattggctgggcctggctccccagtgggtcgGCCTGACTTcgaagtgggtgggcctatgccctctcaGGCCCACCCATTGCCTCGCCCttgcccagtcatatgaaatccatagattatggcttAATGAATGTATTCATATTGACTGATTTAtttgtatgaactgtaactcaacaaaatcttagaaatggttgcatgttgcatttatattttatttcattatAGTATATGACATGTTAcctttggtatggttacataagatagAAAGTTagttaaggcaaaaacaaaaggaggttggttggttgggatgggatgggcgtATAATGCGAATGTCTAGCAGCACAAAGGTTGCATgcttgaatctcatcacggacaaattAAGCATTTTAGCAACTtggcaactacttactacttttttttAAGCTATTttacaactacttagcatgttaaccctaacccttttagctggCCCttcccccaaccttaacccttttagcccAACTCCTAACCAGAACCCCTAAGCCCtagagctaacgttagccagctagctaatgttagccacctaacCAACGTtaaccacaacaaattggaattcgtaacatatcatcaAAAAActgatgatggacatccacaaattaacacatatcatacgaaacgtaacatatcatacgaaatggagtGTCTCAATTTACAAACAGAATAATactaaatgctctgagaccacgtTGATTTGAAGCTGACCCCAATGTCCTGTGATAGTACTAAGTATGGTATTTGGGGGggcaggaccaagtttgggaaactctGTCCTATTGAACAGTAAAAAATAGAATGTCCCGTATGCCCTGTCGGTTAGCTGTTGGGAGCATGTCTCGATAAAACGAACCAGCTGTATCGATGTGGTTAGCACAGATAGGCTGGAAAGTATAATTATGTTTGCATTCACAAAGCCTTACAAGTGTTTGCATTGTGGTgtgaagattattatttttttatttgttaaatgaAATGGATCTTTCTGTGCTGATTTCCTGTGATTTCTAACTGAATTGTGCCATCGTCTTGTCACTAGCAGAAGAGAAAAGAACATGTCTGATTGTATACACCTGGTGCTACTGTTTGTAATGTTTGTGTTATCCTCCCTCCAAAAGGTACTTCATTCATCATAAAGGTCTTGAAATCAGAGACAGGGAGACCCAGTAACCCATTATGAATTATTGAGCGATGACAATTGTATCTCGACGACTTTTCTCTCTGACAAGTGTATCTCTCTAATATGCTAAATCTGGCTACTGTTACTTTGTGTGACATCACCAGACAATTCTGATTCAACCAGCATACCAGCAATGGCCTTTATATACCTTTGTGAGACTCGTACGTGACCTTTCCCTGACCCTCTGTGAAGACAGTGTGAACCTGGTGGATTAAAGACATCTGTATGTGGTTTTGTTCATTATATCAAGTGATGGagcctttgtttctctctctgctgagtACAGTCTTTCCTGTTGTTATTAAACATAGATTTATAATTGCACCTTGTCTCCTCTGCTTCTTTATTTTTGTTACTTCCTCACTTTTCTCACTTGATTGTTAGTCTGATGGTGGGTAATATGGTCcggtgtggctcagttggtagatcaAGGCGCTAGCAAAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432678 lncRNA downstream 98076 30985073 ~ 30986114 (-) True G2127673
TU2432641 lncRNA downstream 152724 30924247 ~ 30931466 (-) True G2127637
TU2432617 lncRNA downstream 199405 30884465 ~ 30884785 (-) True G2127615
TU2432616 lncRNA downstream 200779 30883183 ~ 30883411 (-) True G2127614
TU2432611 lncRNA downstream 209179 30874419 ~ 30875011 (-) True G2127609
TU2433259 lncRNA upstream 82971 31219062 ~ 31219909 (-) True G2128197
TU2433285 lncRNA upstream 106076 31242167 ~ 31242441 (-) True G2128215
TU2433262 lncRNA upstream 109031 31245122 ~ 31281683 (-) False G2128200
TU2433265 lncRNA upstream 109031 31245122 ~ 31283855 (-) True G2128200
TU2433267 lncRNA upstream 110184 31246275 ~ 31286088 (-) True LOC110508945
XM_021589861.2 mRNA downstream 79901 30995095 ~ 31004289 (-) True LOC110508938
XM_021589860.2 mRNA downstream 103738 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA downstream 103877 30978983 ~ 30980313 (-) True LOC110508937
XM_021589856.2 mRNA downstream 176215 30905879 ~ 30907975 (-) True ptger4c
XM_021589843.2 mRNA downstream 377599 30705085 ~ 30706591 (-) False LOC110508928
XM_036966586.1 mRNA upstream 1995 31138086 ~ 31169294 (-) True LOC110508941
XM_036966574.1 mRNA upstream 37836 31173927 ~ 31214079 (-) True LOC110508942
XM_036965889.1 mRNA upstream 117842 31253933 ~ 31254937 (-) True LOC118944807
XM_021589866.2 mRNA upstream 122978 31259069 ~ 31280002 (-) False LOC110508943
XM_021589871.2 mRNA upstream 149055 31285146 ~ 31304046 (-) False LOC110508945
TU2432521 other downstream 377645 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 529003 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 649336 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 682383 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1960448 29118684 ~ 29123742 (-) True LOC118944842
TU2433286 other upstream 108000 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 183192 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 183250 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 183250 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 575517 31711608 ~ 31737492 (-) True LOC110508968

Expression Profile