RNA id: TU2433312


Basic Information

Item Value
RNA id TU2433312
length 991
RNA type TUCP
GC content 0.52
exon number 7
gene id G2128242
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31319283 ~ 31323364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGCTTATTTTACCAGCTCTCTGGAAAAGGCTGTCAACTGAGAAGTTGGAAAATCTGCAAAAATGggCTTCGTGAAAGTAGTGAAAAGTAAGGCGTACTTCAAGAGATACCAGGTGAAATTCAGGAGAAGGCGAGAGGGTAAGACTGACTACTTCGCCCGTAAGCGCCTGGTCATCCAAGACAAGAACAAGTACAACACACCCAAATACAGGATGATTGTGAGGTTCTCCAACAGAGATATCTGTTGCCAGGTGATTGCTGGTGGGCTGTTGCGTGCAGACTTGGTGTGATTTCAACAACGGGAGACCAGATTGTCGCTGCTGCCTATTCCCATGAGCTGCTCAAATATGGTATCACCGTGGGACTGACAAATTACGCTGCAGCCTACTGCACGGGCCTTCTGCTGGCCCGCAGGCTACTGAACAAGTTCGGCCTGGATCAGGTGTACGAGGGCCAGGTGGAGGTGACTGGAGACGAGTTCAACGTGGAGAGTATAGACGGCCAGCCGGGGGCCTTCACGTGTTTCCTAGACGCCGGGCTCGCCAGGACGTCCACAGGAAACAAGGTGTTCGGAGCACTAAGGGTGCTGTCGACGGTGGCCTCTCAATTCCTCACAGcACAAAACGATTCCCTGGCTACGACGTGGAGGGCAAAGAGTTCAACACAGAGATGCATCGCAAACACATCATGGGCATGAACGTGTCGGACTACATGAGCTACCTGATGGAGGAGGACGAAGACGCCTACAAGAAAGTTCTCGCGCTTCATAAAGAACGGAGTCACGCCAGACACAgtagaggagatgtacaAGAAAGCACACACCGCCATCAGAGAGAACCCAGTCCACGAAAAGAAACCCAAAAAAGACGTCAAAAAGAAGAGGTGGAACCGCGCCAAACTTTCGCTGGCACAGAGAAAGGACCGCGTCGCCCAGAAAAAGGCCAGCTTTCTACGAGCACAGGAAGCAGAGGCAGCGGACGGTTAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433267 lncRNA downstream 33253 31246275 ~ 31286088 (-) True LOC110508945
TU2433265 lncRNA downstream 35486 31245122 ~ 31283855 (-) True G2128200
TU2433262 lncRNA downstream 37658 31245122 ~ 31281683 (-) False G2128200
TU2433273 lncRNA downstream 45319 31272595 ~ 31274022 (-) True LOC110508943
TU2433285 lncRNA downstream 76900 31242167 ~ 31242441 (-) True G2128215
TU2433297 lncRNA upstream 18625 31341989 ~ 31342117 (-) False LOC118944817
TU2433296 lncRNA upstream 18869 31342233 ~ 31342593 (-) True LOC118944817
TU2433338 lncRNA upstream 48225 31371589 ~ 31371788 (-) True G2128266
TU2433342 lncRNA upstream 58393 31381757 ~ 31381985 (-) False LOC110508218
TU2433364 lncRNA upstream 61841 31385205 ~ 31385435 (-) True G2128288
XM_021589869.2 mRNA downstream 14130 31285146 ~ 31305211 (-) False LOC110508945
XM_036966529.1 mRNA downstream 14130 31285146 ~ 31305211 (-) False LOC110508945
XM_021589867.2 mRNA downstream 14131 31285146 ~ 31305210 (-) False LOC110508945
XM_021589868.2 mRNA downstream 14131 31285147 ~ 31305210 (-) False LOC110508945
XM_021589870.2 mRNA downstream 14132 31286015 ~ 31305209 (-) False LOC110508945
XR_005040197.1 mRNA upstream 18438 31341802 ~ 31343993 (-) False LOC118944817
XM_036966030.1 mRNA upstream 20631 31343995 ~ 31351271 (-) False LOC110508952
XM_036966033.1 mRNA upstream 20631 31343995 ~ 31351271 (-) False LOC110508952
XM_036966031.1 mRNA upstream 20631 31343995 ~ 31351499 (-) False LOC110508952
XM_036966032.1 mRNA upstream 20631 31343995 ~ 31351517 (-) True LOC110508952
TU2433286 other downstream 74649 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 612796 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 764154 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 884487 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 917534 30401213 ~ 30401807 (-) True LOC110508917
TU2433533 other upstream 388244 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 559351 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 699694 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 699694 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 738685 32062049 ~ 32165022 (-) False asip2b

Expression Profile