RNA id: TU2435745


Basic Information

Item Value
RNA id TU2435745
length 1738
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2130263
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33272894 ~ 33274755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATTTAACACCTCTTAAGTAATTTATTAGAACAGGGATGTTTGCAGAGAAGTCTACCGTCAAGTGGCTCAAACAGTCCTACAAAAGGCTTGCGCCAGTCACCTGTGTCAGTGCATTACCAGCAAGTCTTTCCAGAGCACTGTAATATAAAGCTTTCAGTCACTTACAATATTCCCCGTAAATGTACCTCTTCCCCAACCCAAATGTGtgaagcacaggaggttggtgacagcTTGAGGagaacgggctcatggtaatgactggagcggaatcagtggaattaaATACATCTAACtgatggtttccatgtgttttatGCCATTCCATTAGTTCCGCTCCAGCAGTTATTAGGGGCCGTTGTCCCATCCGGTGGTGTGAAGTATACCCACTTTGGTCAAATAAATCCTCTACTGGAAATGCTAGACACAGATGACTATACGCAAGGTTAGCAGTCATACATTCTGTAGCACTCGATTTGCTCCACATTGAACGGACCATTTCTTTCAGACAAATTATGCAGTAGTGCTgctgtagtaataataataataataataataataataataataataacaacaacaataatagaACAGTAACAGCAAAGATGATCAAcgagggaaaaaaataaaaataaacaagttTCAGAGTACTGGTGCTGATGGAAACAAGATATGTGCACAGTCGACCATCTTCCCTAGTATGAAACAACTATGTTCTCAGAAATAACACCTACTTCAGGCAAAAGAGAGCTGCTTTTGAACTTGTGGTCAAGTGCCCGGAAGATGACAGGGGAATTCTTTAAGTTCTTAAAGTAACTATTGTTCACGTTCACAGTGAACCCAATCAATttcgcatgcatgcacgcacacacacacaaagatttgGTCACGcaaaaaaatacaatatattcGTATAGTGGTCCTATGGTTACTAGTAGTAAAGCCTGGACGACCTTCAAGGACCAGCCTAGAAATACATTTGGACCCTGGCTGCCCTGAAGACACAGGCAGTTAAGGACCAGGGACATGAACCACTGGTCGAGAAAAATAAGAGCAACAGGAAAATAAAGGAAATTCACTTTCACTGCATGACAAGCAGAAGAATATTAAGCTCAAGGGGTCACTAGAATACAGGTACATTTTTAAAACACAGTAAAAGATTTAGTACAAAGGTACTCAAATGTATTGAGTTTAACATCAGAGTAATACATGACTTAAAAGTCAccctttcaaaataaaagcttgtCTAAGATGACCCCAAAATATTCAGATAAAGTCATGAGGAAAAGCCAGCCAAAGCCTCGgggttaaaacacacacacacacacacactgaaatgcaTTTTTTCAAGCagcaatacaaaaaaaatatccaTGAAGTATGCATAATATCTGAAGAaaataaacatactgtatgaaaACATCCCTGCTATCATGTCTCTAAATACAAAACTTTTACCAATAATTTGCTTCAGTTCAACAAGAGATGTCCATTTTCcgcttttttttgtattttatctgTCATTTTAAAAACAGGTTAAAATTTCAGTCCTTAGGTGTGATGACAGTCTTTTTTTTCTCGTATACTTGAAGAAGTTGTAAGCATGCAAGCCTCGTAGAGGAGGGGCCCGGAGGGGCGGGGCTAATGCCCGGAGGGGCTGATGGGGCGGGCTGGTAGTGGTGCTAGAGTATTAAGCCAGGGCTGGGAAGGCCTCTGGGTCGTCAACGTTGGGAACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435746 lncRNA downstream 5699 33261645 ~ 33267195 (-) True G2130264
TU2435769 lncRNA downstream 16918 33227158 ~ 33255976 (-) True G2130286
TU2435778 lncRNA downstream 33548 33239022 ~ 33239346 (-) True G2130295
TU2435771 lncRNA downstream 42512 33229961 ~ 33230382 (-) True G2130288
TU2435761 lncRNA downstream 59098 33213368 ~ 33213796 (-) True G2130278
TU2435877 lncRNA upstream 109050 33383805 ~ 33384077 (-) True G2130382
TU2435879 lncRNA upstream 112773 33387528 ~ 33387751 (-) True G2130384
TU2435880 lncRNA upstream 113277 33388032 ~ 33388359 (-) True G2130385
TU2435882 lncRNA upstream 115277 33390032 ~ 33390255 (-) True G2130387
TU2435889 lncRNA upstream 124980 33399735 ~ 33400010 (-) True G2130394
XM_036966337.1 mRNA downstream 119480 33150005 ~ 33153414 (-) True LOC118944830
NM_001124640.1 mRNA downstream 299026 32968949 ~ 32973868 (-) True rgs18
XM_021588655.2 mRNA downstream 308742 32962496 ~ 32964152 (-) True LOC110508225
NM_001165154.2 mRNA downstream 315588 32954950 ~ 32957306 (-) True rgs1
XM_021589963.2 mRNA downstream 324382 32944542 ~ 32948512 (-) True LOC110509023
XM_036966876.1 mRNA upstream 3799 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA upstream 3799 33278554 ~ 33307172 (-) False LOC110508227
XM_036966880.1 mRNA upstream 3799 33278554 ~ 33307172 (-) False LOC110508227
XM_036966881.1 mRNA upstream 3799 33278554 ~ 33307172 (-) False LOC110508227
XM_036966879.1 mRNA upstream 3799 33278554 ~ 33307293 (-) True LOC110508227
TU2434271 other downstream 1042680 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1107872 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1107872 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1107872 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1244336 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 123792 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 765451 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 766683 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 766814 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 769935 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU355764 True 1422 lncRNA 0.38 2 CI01000098 242153 ~ 245714 (+)