RNA id: TU2436183


Basic Information

Item Value
RNA id TU2436183
length 430
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G2130642
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33849858 ~ 33850287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGTGgcttctagcctggtcccagatcagtttgtgctgcaTAGCCAACTCCTATGATCGTTGTCATGCAAatcagcacaaacagatctgggaccaggctagatgcCCTCAGCTAGACTACCTCCAGGTATAATCAGTACATGTGTCTCTACATGTATATAGTTCATTGGGTATATACCAAATCTACTGCTCATGTCCACCAATGTCAGGTTCATTCCATTAAAACGGAGTTCCTTCAGGATCctcatcagacctgggttcaaacagtaTTTATTTTCGCTCAAGGTTTGATTGAGCCAACCAGGAATGCTGGATTTGCACGTTTATGGTCTGTTCTACTCACTCTattgtgccaggcaagctcaatcaaactCTGCTAAATGATTTTAAAGAAAAACAATAACTTTTAACCAATAACTCTTAACTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436118 lncRNA downstream 58182 33791405 ~ 33791676 (-) True G2130596
TU2436115 lncRNA downstream 61912 33787731 ~ 33787946 (-) True G2130593
TU2436110 lncRNA downstream 74775 33774876 ~ 33775083 (-) True G2130588
TU2436104 lncRNA downstream 86665 33762944 ~ 33763193 (-) True G2130582
TU2436102 lncRNA downstream 88456 33761179 ~ 33761402 (-) True G2130580
TU2436356 lncRNA upstream 23905 33874192 ~ 33874500 (-) True G2130787
TU2436358 lncRNA upstream 25472 33875759 ~ 33876007 (-) True G2130789
TU2436374 lncRNA upstream 55787 33906074 ~ 33906720 (-) True G2130805
TU2436375 lncRNA upstream 56953 33907240 ~ 33907582 (-) True G2130806
TU2436419 lncRNA upstream 156319 34006606 ~ 34006952 (-) True G2130847
XM_036966528.1 mRNA downstream 52572 33626451 ~ 33797286 (-) True LOC110508229
trnav-cac-89 mRNA downstream 267226 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 273867 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 273868 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 281255 33563935 ~ 33568603 (-) True LOC110508228
XM_036966338.1 mRNA upstream 64063 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 103410 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 103410 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 127289 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 127289 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 450774 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1619644 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1684836 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 189919 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 191151 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 191282 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 194403 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 635582 34485869 ~ 34486176 (-) True G2131621

Expression Profile