RNA id: TU2438807


Basic Information

Item Value
RNA id TU2438807
length 2028
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G2132876
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35996867 ~ 35998894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTTCAGACCATTTATTTTCACAGCGAGTATAGATTTCATTAatctatatttttaaaaaaaaacacacgttCGGATTGTACAGCATGTATATTTATATAAGTTCAACTACAAAATAGGTCACATGTATGCAAACATGCTGTACCAGGATTTGAGTCAAGGCAGTTCACACAGTTCTTCAGAAGGGTGAGGATTATGGGATTTCGTACTTTTAAATTAATTTCGTTGCTGTACAAAAATGCAGTCAATTTCAACAACGCTTCTTGGAATCTTTCAACAGAATGAGTGAATTCTGTGTACACTAGACAAGCCTCATCATCATGCTGTGTTAACACActacaaattatatatttttttaaatacagtacatttcTTCAATGAGAAAAACGTGGAGGACATTACATTAACTAAGCTGTGGTCCAAGTGTTGAAGGCGCCTGCTAATATTTATAAATCAGCATTCAGTGAAACATGGAAGtacgttaaaaaaaaaaacatctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacagcctaacagggccaaaccaggacgacgctgggccaattctgcgccgccctatgggactcccaatcatggccagttgtgtgatacagcctggaatcaaaccagggtctgtagtgacgcctccagcactgagatgcagtgccttagacccgctgcgccactctggagcacTCGAGGTATGACATGCTTCAGGCATAATTTGGGAAAACTAAGCAAAAAGGACATGTTTTTATGAAAGAGCATCGCCTTATTGATACGCAATACCTCTTCACCTTTGCTTACAGAAAATCCCAACCGAAATACTGACTTCTATCCCttctagaagaaaaaaaatatgctAATAAAACAAGCCGACTGGTGCAGTTGCGGCGCTAACAATTTTATACATCTATGCGCGAAGGCCAAAACTGAAAGTGATAACTAAAAATCATACTATGTCCACGAAGTAGACTGCCCCGAGAAGATACTTCActtttcaataaaataaaatcaaactgTGAAACAAACCCATGAGCAATGACTCAAAAACAGACACTACTTTTGTCCAAACCATCTCCActttaaacatttaaatattcATAGACAATATAAATAATGACATTTTCCATAATTCTTTATCGAAATAGGTTGAAGGTAACAGCAGTTGTCCAGATATCGGGATATTGCGATGACATCTGTTACCCCGAGCTCTGCTACTTTTATAAATCCAGTGAAACAAGGAATATGGCCAAATGATTGGTGAGGCCACAAAAACATTGGCCAAGTCAGAATTCATATATAAAAAGACAAATACAAACAAACTGTAGGCGAATAACGGTTTTGTTTTACAAACTCAAAAAGCTGTAcatctttttttccccccaggGCTATGACTAATGTAAATAGAATGCCTCCACAGCATTTTAGTAGTATCCTTTGctcaatgcaacaacaaaaaaacaaggtGAGATATGCTGAAGCTGCAAAAGTCCTATATCCATGGTACTGAGTGGTGAGATTAAAGGCTATTCTCACTGATAATCGCTTCAGATCAGAACACACATTTTGACATTAGAAAATGGGAGTAAAGAACAAGGCACTGCTTTTAGCTAGTACCCTAGCCTAGCCTCGTCACAACTGAGCCTTGAACCGCGTACCCTAGCCTCGTCACAACTGAGCCTTGAACCGTGTACCCTAGCCTCGTCACAAATGAGCCTTGAACCGTGTACCCTAGCCTCGTCACAACTGAGCCTTGAACCGTGTACGCTAGCCTCGTCACAACTGAGCCTTGAACCGTGTACCCTAGCCTCATCACAACTGAGCCTTGAACCGTGTACCTTAGCCTCGTCACAACTGAGCCTTAAACCGTGTACCTTAGCCTCGTCACAACGGAGCCTCGAACTGTGTACCCTAGCCTCGTCACAACTGCATTCATTGTATCAGAATCTTGTAATTGTCTCTCCTTTGCGTGTATGTTTCATGGATGGAATAAATCAGGAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438770 lncRNA downstream 114746 35881833 ~ 35882121 (-) True G2132841
TU2438748 lncRNA downstream 125643 35865848 ~ 35871224 (-) False LOC110509091
TU2438742 lncRNA downstream 125758 35866481 ~ 35871109 (-) False LOC110509091
TU2438750 lncRNA downstream 125758 35866481 ~ 35871109 (-) False LOC110509091
TU2438754 lncRNA downstream 125758 35866481 ~ 35871109 (-) False LOC110509091
TU2438834 lncRNA upstream 2410 36001304 ~ 36001673 (-) True G2132903
TU2438841 lncRNA upstream 20039 36018933 ~ 36019457 (-) True G2132910
TU2438842 lncRNA upstream 21244 36020138 ~ 36026003 (-) True G2132911
TU2438846 lncRNA upstream 24886 36023780 ~ 36025101 (-) False LOC118944844
TU2438845 lncRNA upstream 24896 36023790 ~ 36025101 (-) False LOC118944844
XM_036966073.1 mRNA downstream 71084 35870156 ~ 35925783 (-) False LOC110509091
XM_036966685.1 mRNA downstream 154845 35833983 ~ 35842022 (-) True LOC110509089
XM_036966684.1 mRNA downstream 154876 35833983 ~ 35841991 (-) False LOC110509089
XM_021590050.2 mRNA downstream 183420 35782149 ~ 35813447 (-) False tfr1a
XM_021590049.2 mRNA downstream 183722 35782149 ~ 35813145 (-) False tfr1a
XM_021590059.2 mRNA upstream 3959 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA upstream 3959 36002853 ~ 36013047 (-) True rpp40
XM_036966844.1 mRNA upstream 17192 36016086 ~ 36017873 (-) False lyrm4
XM_036966480.1 mRNA upstream 24820 36023714 ~ 36025735 (-) False LOC118944844
XM_021590063.2 mRNA upstream 45147 36044041 ~ 36052174 (-) False LOC110509099
TU2437347 other downstream 1478738 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1478738 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1510691 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1938597 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1954302 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 6595 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 17168 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 24886 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 24896 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 225319 36224213 ~ 36225379 (-) True G2132971

Expression Profile