RNA id: TU2438841


Basic Information

Item Value
RNA id TU2438841
length 525
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2132910
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36018933 ~ 36019457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagattttggaggtagggattgctgagagattttgctagagagattttgctgaggtcattgctgagcgattgtttgtgatagagtttttgctagaggttgattttgctgggagttcattgctgagagtgggtatgttctgtgagtttgttgctcagagcTCACAGCTCATGATGAGGGGCGAACTTCATCAACATTAGATATGATGGTTATTTGATGTCCTCTGTTTCTCAGTTTGTTTGtaaaattgtttaatattctgtttcatttgttcccaggggggaaggggaaggcaccttgggagtgcttaggcaagaggcccgcgggcatacatatacccgtagtatattcactgtctaggcacactaggtaagacctgggttgaccactccctgtattttggttagggcaccaggtggtgctaaattaggtaagtagtgggtaggcaggtaagataggagaggggggctttgagatttactttctttgctttggttccgtccagcccttttccccatattaccg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438834 lncRNA downstream 17260 36001304 ~ 36001673 (-) True G2132903
TU2438807 lncRNA downstream 20039 35996867 ~ 35998894 (-) True G2132876
TU2438770 lncRNA downstream 136812 35881833 ~ 35882121 (-) True G2132841
TU2438756 lncRNA downstream 147824 35866481 ~ 35871109 (-) False LOC110509091
TU2438842 lncRNA upstream 681 36020138 ~ 36026003 (-) True G2132911
TU2438846 lncRNA upstream 4323 36023780 ~ 36025101 (-) False LOC118944844
TU2438845 lncRNA upstream 4333 36023790 ~ 36025101 (-) False LOC118944844
TU2438858 lncRNA upstream 17202 36036659 ~ 36037337 (-) True G2132917
TU2438864 lncRNA upstream 22077 36041534 ~ 36041826 (-) True G2132923
XM_036966844.1 mRNA downstream 1060 36016086 ~ 36017873 (-) False lyrm4
XM_021590059.2 mRNA downstream 5886 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA downstream 5886 36002853 ~ 36013047 (-) True rpp40
XM_036966073.1 mRNA downstream 93150 35870156 ~ 35925783 (-) False LOC110509091
XM_036966685.1 mRNA downstream 176911 35833983 ~ 35842022 (-) True LOC110509089
XM_036966480.1 mRNA upstream 4257 36023714 ~ 36025735 (-) False LOC118944844
XM_021590063.2 mRNA upstream 24584 36044041 ~ 36052174 (-) False LOC110509099
XR_005040236.1 mRNA upstream 24584 36044041 ~ 36052175 (-) False LOC110509099
XM_036966658.1 mRNA upstream 24584 36044041 ~ 36052176 (-) True LOC110509099
XM_021590064.2 mRNA upstream 33961 36053418 ~ 36064572 (-) True LOC110509100
TU2438804 other downstream 1101 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other downstream 1101 36016062 ~ 36017832 (-) True lyrm4
TU2437347 other downstream 1500804 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1500804 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1532757 34485869 ~ 34486176 (-) True G2131621
TU2438849 other upstream 4323 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 4333 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 204756 36224213 ~ 36225379 (-) True G2132971
TU2438933 other upstream 216058 36235515 ~ 36249775 (-) False G2132966
TU2438943 other upstream 218773 36238230 ~ 36249775 (-) True G2132966

Expression Profile