RNA id: XM_036968237.1


Basic Information

Item Value
RNA id XM_036968237.1
length 5524
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110510153
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34638233 ~ 34661249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAAGTCACCTGATTCATAGGCGATACTGCCATTTTACACATGAAGTTTAACTGAAAAAATTAATAATCAGCTAcctaacaaaaaacatttgtaaaatgTAAGAACCATTTGTAAATGCCTTCAGATTAAAACATATGGAACACGGCAATTAAAGGATACGGAAAAACTCGGTGTCACTGCTACAAGACCTCGACACGATCACAGGGAAGCTTGAGAGAAAATACACTAATCATATGCTATTTTGTAACGTCTTCAAAATCAGTCTAGCAGCAATCATCTAACCAGCGCGAACGTTGTGTGATCACCAACCGAGCATTGGTAGGCTAACTAATCAATGATTGCTGCTGTTCATGTAGTATACTGTACTGGCTGTACACTAACCGGCATCATCACCATTAGAAAGCTTTTATGGGGATACATTCACGACCATCCGAACGAATCATTATCGGCTGATTTCGGTGTGCTCGGTTTTGGATAAGGTTTTTTAGATTTGTATGTGTGGACCATTGGATTGCCAATAAAATATATGGTTTACTGACTAGCCGTATATTTTATTTGGCTGCCGTATGAATTCTGCCATCGGATTCGCGCCAGTGTACGTTTTTTGTTTCCAAACGGGCAATCTGTTTAGAGGGCACGCTCCCAATCACCACTAAAGACATTTTGATTTCTAATTCCCCGATTACTTGCTTTTGAAACATGTCTGGACAGTCTATCACGGATCGGATCGCTGCGGCTCAGCACAGCATGACAGGATCCGCTATAAGCAAAGCCGTCTGCAAGGCCACGACGCATGAAGTCAGCGGACCAAAGAAGAAACACCTTGACTACCTGATCCACTGCACCAACGAGCTGAACGTGAGTGTCCCCCACCTGGCTGACACATTGTTTGAGAGGACGGCCAACAACAGCTGGGTGGTGGTGTTCAAATCCCTCATCACCACGCACCACCTCATGATGTACGGCAACGAGCGATTAATCCAGTACCTGGCGTCCAGAAACACACTTTTTAACCTGAGCAACTTCTTGGATAAGGGGGCATTACAAGGATATGACATGTCAACGTTCATCAGACGCTACAGCAGGTATCTGAATGAGAAGGCCCTGTCCTACAGACTGGTGGCTGTGGACTTCACCAAGATGAAGAGAGGGGTTGATGGTATGATGCGCACCATGACCGTTGACAAGCTGATCAAGACTCTACCTATCATTCAGAATCAGCTGGATGCTCTGCTGGACTTTCAGGCTAACTCTAATGAATTGACCAATGGCGTCATCAACAGCGCCTTCTTGCTGCTCTTTAAAGACTCCATCCGCCTCTTTGCTGCCTACAATGAAGGAGTTATCAACATGCTGGAGAAATATTTTGACATGAAGAAGAACCAATGCAAAGATGCCCTGGAGATCTATAAGACGTTTCTGAACAGAATGACCAAGCTGTCAGAGTTTCTCAAAGTTGCAGAGCAAGTTGGAATTGATCAGGGTGACATCCCCGATCTCACACAGGCCCCTAGCAGCCTCCTGGAAGCTCTGGAGCAGCATCTGGCCTCTCTGGAGGGGAGGAGAACCAAGGAGCTCTCCACAGACACCAGAGCCAGCACCTTAACCAGTGCTGTATCGTCACTGTCCAGCACTGGAATCTCCCTCAGCCTCATGGAACAGAAGGAGGACCCGAACAGCCTCCAGGATGAGGGAGCCAAGGTGAATGACATGCAGACGCCCACCATCTCTCCCAGTGCCCAGTCAGTGGGCAGTGCCAGCAGCGGGGCCACAGAACTCTTCTCCAACTCATCTGTTCTATCCGGTACCAATAAcGTGCCAAACCTCACCAGCGACCTTTTCAACGTCCAGCCCTCCTACAACCCAACGATCCAGACAACACACACTGTACCGTCTAACAGCAACGCCTGGGGAGGTTTGGGGCTCCCAGGGGATCTTCTGAAGCCAGCTCAGCCGACACACGTCCACTCCCACAGCCCTGGGATCCCGCTGCACTCTGGGGGGAAGATGATACCCAGCCACCTGGACTCCTCTTTAGCCAACCTCGTTGGTAACTTGCAGTTCGGAGAAATACCAGCCAAAAAGCCAGAGCTCCAGTGGACCCACCTGGTAGAGAAGAGGCCCACAGGGGGGACTCACTGGCAGGCCAAAACCACCTGCACCACCCCCAACTGGAGCCACCACACACTCATGGCTCCTCAAGCTATGCCCATACCACAGCTGAATGGAATGATCTATACTGGCTATGCTCCAGCACCAGTTGCTTTTCCCATGACGACACAGCAACTGCCTGTTTATGGAATGATGCCTCATCAGATGGGGCAGATGGGTGGAGTCCCTATGATGGCACCACAGTCTATGATGTACAACCAGCCTGTCCTGCGACATACCAATCCATTTGCCCCCATGCCAGGAGCCCAGGCTTATTTTCCTATGCAGATGCACTTCATGTAGGACCGGGAGTATTTTACCATGACAGCAAAGCAGAGAGACAAAACAAACCAATCCAGAACCAAATACAATGCAAGATAGAGGAGCAGAAGATCGGGGTGGAGACAGactggagatgtgttggtgtcCGTGCTCTTTCAGTGGCCTCTGTGAAATAGAACCTCTGTCACATTGTGTATCATGACTGATAGTCCCATCCAAGTCTTTTGAAAAGTCACAGCTCACATTCATTctgtatttgatttgatcatttgaatGGGTAATGTTCTGTCTGTTGAACCCCTGGTATGATGACTGCTGTATTCCAGTTTGGAGCTTGGCCCTTTGTAGTGAATTGCAGACAACTGCCAGCCCCCATCCACCGGTGTCTATCTCTTTCTCTAAGAGTTTGCACGCACTTTAATCAATGTCTACATGCACATTGTCCACTTAGCATCTCATACAAACCACTACAGTGCCGCTACGTCTTTCCTCTCCAACTTCCTGTCAGAGTTGCTGTTGCCGTCGTTGTAACATGGATAAGTGTGtcctttttttgtgtgtatttaaATCAATGTACACCACCATCAGTATTCATTCCATGTTGTTGTTAACTGCAGATTCCACAGCCAGTTGTAGTAAGACCTTGGATAAATGGCTTGGAGACacatgttgtgtgtatgtactgtgtatcTGTCTGAGGGTTAGGTAGCACTCAGACATCTAAATGTACAAAGGCTATTGTGTATTGTTTTCATAGGTTCCTGTGAAAGCTGTGGTCTGCATGGCATTGACTGGCCACTGCTAGTTCGAAATGGAGAACTCCATGTCTACATACATCCACACACTGAAAGTATTACTCCTATGAAAGCAATGAAGAAGGCCCACTCATAATTTCATATGTAACGTCATAACACATTCTGCCTCTGCTGTCCCGTCCATTGTTCGCTCTGCTTGAGGTTGTTTTATATGATCCATGTTTCTTGAGCTGCTACAACAGATTCTGCTCTTTGAAACTGGTTGCGTTTTATAGATAGATGTGCTGTTCTTGTAATGGTCCTACCAGTCTTGCCCTGTCTGTGAGTAAACGTTGGGAGAGTGCGTTCTTTGTTTTTCTTCTCCAGCTAACTGTACTGCTCCAGGTTGAGGCCTACTGAGTGGTTGTGTTTCTGAGTGGCAGTTATTGTAGTGTAGCTCCTCACCAACCACTGGGGAATGTTGTTGAGGAGCTCTTTCTGAGACTGCGTCCTGAGACAGTGAAACTGACACTCGCTCTAGTGAATCGGCAACTCTCTGACATACCGTTGCTAACTCCAGCCCCAGAGAGAGCCTAGCTGTCCGGAACTTTAGCAGAAGGCAGGGGACAAGTGAGGAGGAAGTACAGGGATCTGTAAATGTGATCAAGGGTCATGTCTGTCAAACTCCCAAAAGAACTAACGGTGACAGACAGCATATATAGCACAAACCCTGGAGGGGTGAGCGTTCTACTGCACAAAACTAAAACCATTGCTGGGATGTACAGTCGAAGGGGCTGGGGAAAGCTTTGTTTTCTATTGATTGTGTTTCTCTATGTCCATGCCTTCCCCGTGAGTTAAACAGGGTAGTGATCCTCCACGAGGCCTCCCAGCTCCTGGGTCCTCCGAGGTCAATGAGGTCACTGAAGTCATCCAGGCAATCCGGTAGCGTGTATTTAGCAATGAGTAGTCAAGTGTCGTAACGTGTCTCAATACAAGTCCGTCGTCTGTTAGATTGCTATAGAGCCTCTCATTCTGCTAATCACTGGCCTGTCGGACTACTGCATTCTGATCTGTGACCAGCCCACACTGTGTAGATGTTATTAGAAACGTTGTAGTTCAGTCTCAATGTCCTCTGTGTCAGTTAAATGGTTTCATGCAAGTTTGTGCAGTCCCATAGACCAATTCTGACCGTTCTGCTGtcctctgtatataacctcgtgTGTTTTTGATGTGTTCTCTGTAAGTGATGGCCCATGGAGATGCCATGGGTTGTTATAGCTGTGTCTGTGGTGGGGTTATTGTGTTTGGAGATGTGATGGGCTGTTCGTCTGTAATGTTTGTCTACATCTTGATGAGGGATGGGGGTTGGGTTCAACAGTATCACAACTTGTCTACCAAGAGTGTCTTCATTGTGGCAGTGGGCACTGTCCTCTCAGTCCGTACAGGAACATTTTGCACCAAAGTCATCAAGCGCAGCTTTTCTCAAGGTCACATTGCTGATATCCAATTTGAAGGAATTTGATTTCAGAGACACAAGTCTTTATGCATGATTATTGTTGTCTTTTTATTGACTTGTGTGCCCGGTAAAAAGCATGATCATGTGTGAAATTGCACTTACCGTGTGTTTGCAAAACAATATTTTACTTACCTCTTTACAGAAGCATCCATTGGAATTCATAAATGTTTGTCCCACCAGATATCCAGACGTCTGTGTTGCATTCGAAATGCAATTCGGAAGCTCTATCAAATCAGTTATGAGACCACACGTTTGTGAAACAACATGAATGACATGCATCACCTAGCTAGCTAGACATTAGTCTGCAAAACCCCTCTTTAGCGTTgctattttcaatacatttgttgAATGCTTGCTCTTTTTTTGAGTACTCTGACAACATTTTTGGACATCTCTAAGGATCTCTTGTCCCCTTGTCATTGGACCACATCATTCTTCGCCAATAAGCTTCCTTTGTGTGTGCAGTGGGAAATCTCACTCCCATATCTTTTGGCCACTGAAAGATGTCAACAACATGCGTTTTCACTTTTTGCCTGACGTTCTCtggttatatataatatatgcatatttcaCAATGTGAGAACAGTATTACCTACTGTATaccatactgtctgtctggaaaCTGTCATTTTTCCTGTGATGAAAGCATTGTCCAGGATGTCCTGTTTGAGGAGTGAGGGCCCATTCCTTTTGATTTTGTCCATCAAATGGATtgataatacataatacactgtATTGTCAATGATAAGTTACATTGTTATAAACAATTGGTTCTTATTTTAAATGCAGAGGTTGTTGTTTTTGGAATAAAATAGAATAAATTGGCATATTTTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2488950 lncRNA upstream 23935 34612829 ~ 34614298 (+) False G2177518
TU2488952 lncRNA upstream 24050 34612890 ~ 34614183 (+) True G2177518
TU2488906 lncRNA upstream 57181 34580644 ~ 34581052 (+) True G2177476
TU2488900 lncRNA upstream 73103 34552309 ~ 34565130 (+) True G2177470
TU2488901 lncRNA upstream 91647 34546072 ~ 34546586 (+) True G2177471
TU2488975 lncRNA downstream 1024 34662273 ~ 34662564 (+) True G2177532
TU2488991 lncRNA downstream 14552 34675801 ~ 34676298 (+) True G2177548
TU2489054 lncRNA downstream 101548 34762797 ~ 34763001 (+) True G2177606
TU2489062 lncRNA downstream 108552 34769801 ~ 34770015 (+) True G2177614
TU2489064 lncRNA downstream 111581 34772830 ~ 34773119 (+) True G2177616
LOC118945290 mRNA upstream 225 34635244 ~ 34638008 (+) True LOC118945290
XM_021591503.2 mRNA upstream 26943 34598826 ~ 34611290 (+) False slc7a3a
XM_021591505.2 mRNA upstream 27447 34598826 ~ 34610786 (+) False slc7a3a
XM_021591504.2 mRNA upstream 27447 34598828 ~ 34610786 (+) True slc7a3a
XM_021591501.2 mRNA upstream 42180 34591821 ~ 34596053 (+) False LOC110510150
XM_021591512.2 mRNA downstream 42076 34703325 ~ 34715546 (+) True LOC110510155
XR_005040521.1 mRNA downstream 87621 34748870 ~ 34760781 (+) False LOC110510157
XM_021591514.2 mRNA downstream 87621 34748870 ~ 34761158 (+) True LOC110510157
XM_021591516.2 mRNA downstream 102433 34763682 ~ 34782858 (+) False LOC110510158
XM_036968245.1 mRNA downstream 115466 34776715 ~ 34782858 (+) False LOC110510158
TU2488844 other upstream 177464 34359624 ~ 34460769 (+) True G2177424
TU2488771 other upstream 406050 34231656 ~ 34232183 (+) False LOC110510132
TU2488718 other upstream 502834 34131011 ~ 34135399 (+) True LOC110510125
TU2487963 other upstream 1402698 33222817 ~ 33235535 (+) False cxxc5a
TU2489017 other downstream 141690 34802939 ~ 34825545 (+) True LOC110510159
TU2490509 other downstream 844599 35505848 ~ 35506879 (+) True ndufa2
TU2491092 other downstream 1190405 35851654 ~ 35856462 (+) False G2179418
TU2491093 other downstream 1190405 35851654 ~ 35856462 (+) False G2179418
TU2491094 other downstream 1190405 35851654 ~ 35856462 (+) False G2179418

Expression Profile