RNA id: TCONS_00058674


Basic Information

Item Value
RNA id TCONS_00058674
length 3618
RNA type mRNA
GC content 0.49
exon number 27
gene id XLOC_029968
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19261391 ~ 19296249 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCATTCTTTGGCTTAGACTGTGCGAGGAAGAAAGAGAAAGAGGTGGAGAGAAAAATCAGAGCAAACGACAGAGAATATAATTCATCCTTCAAATATGCAACCAATTGCATCAAGACCTCCAAATACAACCCCTTCTCTTTTCTGCCTCTCAACTTGTTTGAGCAGTTCCAGAGGATCGCCAATGCTTATTTCCTCTTCCTGCTCATTCTGCAGGTTATTCCTGCTATTTCTTCTCTGTCTTGGTTCACCACTGTCGTCCCGCTAGTGTTAGTATTATCGGTGACTGCAGCCAAAGATGCCATTGATGATATTaatCGCCACAGAAGTGACAGGCAGGTCAATAACCGGAAGGTCAATGTGCTCATCAGTGGAAAACTGACAAGTGAGAAGTGGATGAATGTGCAAGTGGGAGACATTATCAAGTTGGAGAACAACCAGTTTGTCACAGCAGATTTGCTCCTGTTGTCTAGCAGTGAACCTCTCAACCTGGTTTACATTGAAACTGCAGAGCTTGATGGGGAAACTAACCTGAAGGTTAAACAGTCTCTGACTGTAACAGGAGACATGGGGCACAATTTGGAGGCTTTGGCTGCATTCAACGGCGAGGTGTGTTGTGAGCCTCCTAACAACCGCCTGGATCGCTTTACGGGCACACTGACGTTTGACACGCAGAAATACTCACTGGACAATGAGCGGGTCCTGCTGAGGGGCTGCACTCTCAGAAACACAGACTGGTGTTTTGGCCTGGTGCTGTTTGCAGGCCCAGAAACCAAGCTGATGCAAAACTGTGGAAAAAGCACCTTTAAGAGGACGAGTATTGATCGACTCATGAATGTGTTGGTGCTTTTTATTTTTGCACTTCTAGCACTGATGTGTATCATTCTGGCCGTGGGACATGGGATTTGGGAAAACTACACAGGGTCAAAGTTCAATGTCTTTCTTCCACATGAAGAGAACGCAGCCTTTTCAGCCTTTCTCACTTTCTGGTCGTACATTATAATCCTCAACACTGTGGTGCCCATCTCACTttatgtcagTATGGAAGTGATTCGGTTAGGCAACAGTTACTACATCAACTGGGACAGGAACATGTATCACACCAGAACTGACactccagctgaggctcgaaccacaACACTCAACGAAGAGCTCGGTCAGATCAAATACATCTTCTCAGACAAAACTGGCACGCTCACCCAGAACATCATGACCTTCAACAAATGCTCCATCAACGGGAAATCTTACGGAGATGTTTTCCAGCACTACAGTGGACAGACGCTGGAGATCACAGAGGAAACGACACCAGTGGACTTTTCCTTCAACGGACTTGCAGATCCAAAGTTTCTCTTTTATGATCACAGCCTGGTAGAGGCGGTAAAGCTGGAGCTTCCAGAAGTTCATGCTTTCTTCAGACTACTCGCTCTCTGTCACACTTGCATGGCAGAGGAGAAGAAGGAGGGTCATCTAGTGTACCAGGCCCAATCTCCTGATGAGGGTGCCTTGGTCACGGCCGCGCGTAATTTCGGTTTTGTGTTCCGCTCTCGCAGTCCTGAGACGATTACAATAGAAGAGATGGGCATTCAGAGGACCTATGAGCTGCTAGCCATCCTGGACTTTAACAATGTGCGGAAACGGATGTCTGTGATTGTCCGTAATCCGGAGGGCAAACTCTCTCTGTACTGTAAAGGAGCAGACACCATCATCTACGAAAGACTACATCCTTCCTGTAGCAAACTGATGGAGGTCACCACTGAGCACCTCAATGAGTTTGCTGGAGAAGGTTTGAGGACTCTTGTTCTAGCGTATAAGGATTTGGATGAAGACTATTTTGCAGAGTGGAAACAGCGCCATCATGAGTCCAGTGTGGCAATGGAGGACAGAGAGGAGAAACTGGACAAAGTGTATGAGGAGATAGAGAAAGACATGATGttaaTTGGGGCCACGGCCATTGAGGATAAACTTCAAGATGGAGTCGCTCTTACCATTGAGCTGCTGGCGAAAGCAGAAATCAAAATCTGGGTGCTCACCGGGGACAAGCAAGAGACCGCTGAGAACATTGGCTACTCCTGTAACCTGCTGAGGGAGGAGATGAACGACGTGTTTATTGTTGCAGCACATTCACCTGAGGAGGTCAGACAGGAGCTGAGgGATGCCCGTCTAAAGATGCAGCCTTCTACTGAACAAGATAAATTTCTTATCCCTGAGGTTATCCTGGGTAATACTCCTAAAGTGGTTCAGGATGAACATGTGAACGGAGAATATGGACTGGTGATAAACGGACACAGTCTGGCGTTCGCTCTGGAGAGCAGCATGGAGCTGGAGTTTCTGCGGACAGCATGTATGTGTAAGACGGTGATCTGCTGTCGGGTAACTCCTCTACAGAAAGCTCAGGTCGTGGAGCTCGTCAAGAGATATAAGAAAGCTGTCACTCTGGCCATAGGAGATGGAGCTAATGATGTTAGCATGATTAAAGCGGCTCATATTGGTGTGGGTATCAGCGGTCAGGAAGGGATGCAGGCTGTGCTGTCCAGTGACTTCTCCTTCGCTCAGTTCCGCTTCCTGCAGCGCCTCCTACTGGTTCATGGACGCTGGTCATACCTGCGCATGTGCAAGTTTCTGCGCTACTTCTTCTATAAGAACTTCACCTTTACCTTTGTGCACTTCTGGTATGCATTTTTTTGCGGCTTTTCTGCTCAGACGGTTTATGATGAAGGCTTCATCACTTTGTATAATTTGGTATACACTGCTCTTCCTGTTCTGGGAATGAGTCTGTTTGACCAGGATGTGAATGCTAACTGGAGTCTGGAGTTCCCTCAGCTGTACGTGCCGGGTCAGTTGAGTCAGTACTTCAGTAAGCGTGCCTTCATGATGTGTGCGCTTCACAGCTGCTACAGTTCTCTAGTGCTGTTCTTTGTGCCTTACGCCACTACATATGACACCGCGAGAGCCGACGGCAGAGATGGAGCAGACTATCAGTCATTCGCACTCATTACTCAAACCTGCCTCACCGTCACTGTTTGTGTGCAGTTGGGGCTGGACCTCTCGTACTGGACTGTGGTCAACCATCTGTTCGTTTGGGGAAGTTTgggaatgtttttctttttgaccTTCACCATGTATACTGATGGACTTTTCAAGTTACGTCCAGCTTCTTTTGCTTTCATAGGAACTGCCCGAAATTGTCTTAACCAGCCCAATGTGTGGCTGACCGTGGCATTGACAGCTTTACTATGTGTCTTGCCTGTGGTTGCGTACCGGTTCATCTACTGCCAGATCTATCCTACCATTAATGACAAGGTGAGGTATAAGATGCGTCAGATGAAGGAGCCGGCTCCTCGGCCACGTCCGCGGCTGACCCGCAGGAGCACACGCCGTTCTGGTTACGCCTTCTCTCATGCCCAAGGCTACGGGGACCTTGTGACATCTCGCAGATTCCTCCGGCGACCCGCGCCCGCTCGCTCCGCAGGCTTCACTCCAGCTGGACGCTCTCCTGGGTTCAAGCCCACGGGTCGATCCGCAGGGTACAGCCCGGTCGGGAGAGAACAGAACCCTAAACAAAAAGTTGAACCCACGTCACTGCAGATGTTTCGCGCTGTTAAAGACGCTTCTTTCTGA

Function

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0015914 phospholipid transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-48 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in Golgi organization and phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and trans-Golgi network. Orthologous to human ATP8B5P (ATPase phospholipid transporting 8B5, pseudogene).

Ensembl:

ensembl_id ENSDART00000089173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061426 lncRNA upstream 181475 19068184 ~ 19079916 (+) True XLOC_029966
TCONS_00061678 lncRNA upstream 223807 18822811 ~ 19037584 (+) True XLOC_029963
TCONS_00061679 lncRNA upstream 434626 18824394 ~ 18826765 (+) True XLOC_029964
TCONS_00061677 lncRNA upstream 451178 18808714 ~ 18810213 (+) True XLOC_029962
TCONS_00061676 lncRNA upstream 458057 18802187 ~ 18803334 (+) True XLOC_029961
TCONS_00061680 lncRNA downstream 104150 19400399 ~ 19403378 (+) True XLOC_029971
TCONS_00061427 lncRNA downstream 108283 19404532 ~ 19405938 (+) True XLOC_029972
TCONS_00061681 lncRNA downstream 665546 19961795 ~ 19965283 (+) True XLOC_029980
TCONS_00061682 lncRNA downstream 1246651 20542900 ~ 20546489 (+) False XLOC_029992
TCONS_00058709 lncRNA downstream 1246743 20542992 ~ 20546489 (+) False XLOC_029992
TCONS_00058669 mRNA upstream 23691 19094153 ~ 19237700 (+) False XLOC_029967
TCONS_00058668 mRNA upstream 23691 19094153 ~ 19237700 (+) False XLOC_029967
TCONS_00058670 mRNA upstream 23691 19094462 ~ 19237700 (+) False XLOC_029967
TCONS_00058673 mRNA upstream 57075 19165949 ~ 19204316 (+) True XLOC_029967
TCONS_00058671 mRNA upstream 126603 19097194 ~ 19134788 (+) False XLOC_029967
TCONS_00058676 mRNA downstream 13628 19309877 ~ 19317924 (+) False XLOC_029969
TCONS_00058677 mRNA downstream 18325 19314574 ~ 19327562 (+) False XLOC_029969
TCONS_00058678 mRNA downstream 24305 19320554 ~ 19331482 (+) True XLOC_029969
TCONS_00058679 mRNA downstream 40859 19337108 ~ 19382524 (+) False XLOC_029970
TCONS_00058680 mRNA downstream 47631 19343880 ~ 19383694 (+) True XLOC_029970
TCONS_00058672 other upstream 126481 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058656 other upstream 2231977 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058647 other upstream 3518138 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058637 other upstream 4619122 14642152 ~ 14642269 (+) True XLOC_029938
TCONS_00058617 other upstream 5961977 13299331 ~ 13299414 (+) True XLOC_029924
TCONS_00058694 other downstream 781445 20077694 ~ 20077810 (+) True XLOC_029982
TCONS_00058714 other downstream 1378684 20674933 ~ 20675050 (+) True XLOC_029996
TCONS_00058725 other downstream 1961969 21258218 ~ 21259238 (+) True XLOC_030005
TCONS_00058726 other downstream 1974201 21270450 ~ 21271359 (+) True XLOC_030006
TCONS_00058727 other downstream 1977916 21274165 ~ 21278501 (+) True XLOC_030007

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_01210165_01229368.mRNA True 4408 mRNA 0.46 27 CI01000071 1209497 ~ 1229487 (-)
bowfin (Amia calva) AMCG00010185 True 5929 mRNA 0.47 27 CM030129.1 17739134 ~ 17774687 (+)