Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058909 |
| length | 675 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_030125 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 27583117 ~ 27743830 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-333 | Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in habenula; hindbrain; and retinal inner nuclear layer. Orthologous to human ZMAT4 (zinc finger matrin-type 4). |
| ensembl_id | ENSDART00000181080 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061706 | lncRNA | upstream | 517710 | 27076003 ~ 27091304 (+) | True | XLOC_030118 |
| TCONS_00061704 | lncRNA | upstream | 557555 | 26949711 ~ 27051459 (+) | False | XLOC_030117 |
| TCONS_00058914 | lncRNA | downstream | 198066 | 27917379 ~ 27920706 (+) | True | XLOC_030127 |
| TCONS_00061707 | lncRNA | downstream | 562856 | 28282169 ~ 28287958 (+) | False | XLOC_030132 |
| TCONS_00058922 | lncRNA | downstream | 563136 | 28282449 ~ 28287958 (+) | False | XLOC_030132 |
| TCONS_00061708 | lncRNA | downstream | 563136 | 28282449 ~ 28292411 (+) | True | XLOC_030132 |
| TCONS_00058923 | lncRNA | downstream | 577937 | 28297250 ~ 28304975 (+) | False | XLOC_030133 |
| TCONS_00058905 | mRNA | upstream | 70269 | 27525477 ~ 27538745 (+) | True | XLOC_030124 |
| TCONS_00058904 | mRNA | upstream | 70839 | 27488975 ~ 27538175 (+) | False | XLOC_030124 |
| TCONS_00058903 | mRNA | upstream | 118515 | 27442247 ~ 27490499 (+) | False | XLOC_030124 |
| TCONS_00058901 | mRNA | upstream | 119905 | 27440325 ~ 27489109 (+) | False | XLOC_030124 |
| TCONS_00058911 | mRNA | downstream | 178191 | 27897504 ~ 27920572 (+) | False | XLOC_030127 |
| TCONS_00058912 | mRNA | downstream | 178913 | 27898226 ~ 27919419 (+) | False | XLOC_030127 |
| TCONS_00058913 | mRNA | downstream | 178995 | 27898308 ~ 27907250 (+) | False | XLOC_030127 |
| TCONS_00058915 | mRNA | downstream | 322654 | 28041967 ~ 28047353 (+) | False | XLOC_030128 |
| TCONS_00058917 | mRNA | downstream | 441190 | 28160503 ~ 28213627 (+) | False | XLOC_030129 |
| TCONS_00058863 | other | upstream | 1375946 | 26221016 ~ 26233068 (+) | False | XLOC_030104 |
| TCONS_00058859 | other | upstream | 1388857 | 26212632 ~ 26220157 (+) | False | XLOC_030103 |
| TCONS_00058848 | other | upstream | 1636854 | 25972068 ~ 25972160 (+) | True | XLOC_030094 |
| TCONS_00058845 | other | upstream | 1796775 | 25811873 ~ 25812239 (+) | True | XLOC_030092 |
| TCONS_00058834 | other | upstream | 1926909 | 25680842 ~ 25682105 (+) | False | XLOC_030089 |
| TCONS_00058916 | other | downstream | 322671 | 28041984 ~ 28042519 (+) | True | XLOC_030128 |
| TCONS_00058938 | other | downstream | 1093140 | 28812453 ~ 28818613 (+) | True | XLOC_030140 |
| TCONS_00058939 | other | downstream | 1105299 | 28824612 ~ 28826140 (+) | True | XLOC_030141 |
| TCONS_00058952 | other | downstream | 1495217 | 29214530 ~ 29214646 (+) | True | XLOC_030148 |
| TCONS_00058961 | other | downstream | 2074763 | 29794076 ~ 29799058 (+) | True | XLOC_030154 |
