RNA id: TCONS_00005540


Basic Information

Item Value
RNA id TCONS_00005540
length 118
RNA type rRNA
GC content 0.51
exon number 1
gene id XLOC_003024
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40741330 ~ 40741447 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGTCAGcagttagctctctgcaactctcaaatggtcgcccactgaagccaagcaggccTGTGCCTGGTCAGTATTTGGATtggagatcacatgggaaagctaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000119064

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005779 lncRNA downstream 119375 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 242121 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 250693 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1651242 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 2077096 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00006123 lncRNA upstream 109690 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 626661 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1241462 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1241462 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 1241462 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005539 mRNA downstream 123763 40616572 ~ 40617567 (-) True XLOC_003022
TCONS_00005538 mRNA downstream 128536 40611799 ~ 40612794 (-) True XLOC_003021
TCONS_00005537 mRNA downstream 146883 40593443 ~ 40594447 (-) True XLOC_003020
TCONS_00005535 mRNA downstream 151554 40588802 ~ 40589776 (-) False XLOC_003019
TCONS_00005536 mRNA downstream 151689 40588907 ~ 40589641 (-) True XLOC_003019
TCONS_00005541 mRNA upstream 44749 40786196 ~ 40791977 (-) False XLOC_003025
TCONS_00005542 mRNA upstream 45558 40787005 ~ 40819136 (-) False XLOC_003025
TCONS_00005543 mRNA upstream 45559 40787006 ~ 40819022 (-) True XLOC_003025
TCONS_00005544 mRNA upstream 80357 40821804 ~ 40826657 (-) True XLOC_003026
TCONS_00005545 mRNA upstream 106907 40848354 ~ 40939706 (-) False XLOC_003027
TCONS_00005531 other downstream 203283 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 220230 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 223732 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005514 other downstream 271936 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005507 other downstream 322271 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005547 other upstream 161674 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005570 other upstream 1228444 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1370125 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 2170486 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 2251399 42992846 ~ 43028806 (-) True XLOC_003058

Expression Profile

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