RNA id: TCONS_00005541


Basic Information

Item Value
RNA id TCONS_00005541
length 1981
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_003025
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40786196 ~ 40819136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACTGTTGGAAATGGCCTCCAGGTGTCCGTGTTGTCGGCGACAGAGATCTTCATCTCCATCTCAGAGAATCTTACCTGGTCAGACACTTCGCATCGTGATGATTGGGAAAACAGGAGTGGGAAAAAGCGCTGTGGGAAACACCATCCTAAACAGAAAGGTTTTTGAATCAAAGCCTTCTGCAAACTCAGTCACTGAATCATGCCATAAAGCATCAGTTTATGATACAAGAGAAATTTACGTGATCGACACTCCTGGAATCCTGGATACCAGCAGAGAGAAAGACATCATCAAAAGAGAAATTGTGAAATGTATTAAGGTTTCAGCACCAGGTCCTCATGCCTTCCTGCTGGTGATACAGATCGGCCGTTTCACCCCTGAAGAGCAAAGAGCTGTCCAAGCCCTGCAAGAGCTGTTCGGGGAAGATGCTTCAAACTACATGATCGTGCTCTTCACTCATGGAGATTTACTCGAAGGTCAAACTATAGATGAGTATGTGAGGGAAGGCCACATCGAGCTCCGCAGAGTCATCCAGAGTTGTGGTGGTCGATATGCGGTGTTCAATAACAATATAAAGGATCGCACTCAAGTCAAGACATTAATTGATAAGATTGATCAAATGGTGGCAGTAAATGGAGGAGAATGCTACACTCAAGAGATGTTTCGAGAAGCAGAAGAAAAGATTAGGCAACAGAAAGCGAAGAGAGAGGATGCAGAGCTTCAGGAATATCCGTTTAGCTTTCTCGGGAATCTTGAACACAGAGTCACTTTGTTCCAAAGGATTTTATTGGAAGGCTATCGTGAACAGTTTGCTATTGAGAGTGGAATTTACAAATGAACTAAAGACGCGTAGCAAACACACCTGCGGcctcatttataaaatgtttattttgaaagATCATTTAGCTAAAGCGTAATTCAAAGAAAACTAGGCATGTCCCAATCAGAGTTTATTTGCCCTCAAGTCCAAGTcggagtcatttgattttgagtatcaaCCAAAACCCggtccgatacttctataatgcataaaatgaataaaaaaattgtaaaaaaaaaaaaaaaaaaagagcgaagTAACAGATCAAGGGTAatccttatttttttaatttaattcaacttattttaacattcaacaactctgttaacaaacggAGCACGTccgtgaggtagcttgaacaatcgagtaataaataacatcaattcttcactttcggACTTTAGCACAACAGTAAACATAGAAAAAtgcatatctcacagtttgctatggcaatgcaAACTGCAACGCAATGCAATGCAACTTTATAATTgctccagaccacagacatacttGCGCTTTTCGCTTCAAGCTGATTTCGTGTtttactttgccagcatttaaccaatagcatctctgcaacaaattGATGTCATGCCACACGTGTTACTGTTTCTGTGTGATGGCAAGAAAGAgctctaactctgtgccaccgcataactacagatgtgttaaaaaataatgagaatatataatGTATTCATGTATTTTCGAGTCCTGATCGGGTGGTAACATCTGATTCCGATCAAATCTGGACATTCCTAAATCCTCATTCATATGCCTCTTGTTTGAGGACATTTTACcatcttcattaaaaaaaaaatgcacgtcAAAAATGCCAGTTCAAGGGCATGTTGAGCCAACAATCGGTGATTATCAAAAGCAGTATTAAGTATTTGCGTAAGTAACATACAAAGGCAATGCAGACACTTTTTTTGTATGTAAATACTAGGTTTTCATGTGGACAAACGGCAAAccagtgtaaaaaataaacaacacccGTGTTCGTGTAGACAGGGCCTAAATATCAAATGATCTTGAAATTGTGCACAGATGAATGCTATCAGATCTCCACTTTGTAAACGTCCCTTAATTATCTGATTAATACATATCTGCTTTTCTATGCTTGAGAATgatgagcacaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-47 Predicted to enable GTP binding activity. Is expressed in adaxial cell; cardiovascular system; and cephalic musculature.

Ensembl:

ensembl_id ENSDART00000109020

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005779 lncRNA downstream 164241 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 286987 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 295559 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1696108 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 2121962 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00006123 lncRNA upstream 59160 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 576131 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1190932 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1190932 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 1190932 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005539 mRNA downstream 168629 40616572 ~ 40617567 (-) True XLOC_003022
TCONS_00005538 mRNA downstream 173402 40611799 ~ 40612794 (-) True XLOC_003021
TCONS_00005537 mRNA downstream 191749 40593443 ~ 40594447 (-) True XLOC_003020
TCONS_00005535 mRNA downstream 196420 40588802 ~ 40589776 (-) False XLOC_003019
TCONS_00005536 mRNA downstream 196555 40588907 ~ 40589641 (-) True XLOC_003019
TCONS_00005544 mRNA upstream 29827 40821804 ~ 40826657 (-) True XLOC_003026
TCONS_00005545 mRNA upstream 56377 40848354 ~ 40939706 (-) False XLOC_003027
TCONS_00005546 mRNA upstream 66127 40858104 ~ 40939706 (-) False XLOC_003027
TCONS_00005548 mRNA upstream 121326 40913303 ~ 40939303 (-) True XLOC_003027
TCONS_00005549 mRNA upstream 159720 40951697 ~ 40968095 (-) False XLOC_003030
TCONS_00005540 other downstream 44749 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 248149 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 265096 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 268598 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005514 other downstream 316802 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005547 other upstream 111144 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005570 other upstream 1177914 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1319595 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 2119956 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 2200869 42992846 ~ 43028806 (-) True XLOC_003058

Expression Profile

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