RNA id: TCONS_00006123


Basic Information

Item Value
RNA id TCONS_00006123
length 930
lncRNA type read_through
GC content 0.48
exon number 3
gene id XLOC_003028
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40851137 ~ 40857097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAGATACAGTCCTTCACACATACATTCTAACGATTATGTGCTGCGCAGTGATACTAGCCTATACCAAAACTATCGTGTTTATAGCACTGCTGGAGCTCTGTATTTGATGAATCGTCAACCAGCTGTGGAATATTTTTTGTCAACAACATTGACGTGTATGGCACACTTTTGTTCACCCTCTAATTACTCATCACCACACTTACCAACGCCTCGACTTACAGAAACTAGAGGGATCGTCGACAGAAGCACATAGGAGAACAATTGCGCCCTCTTGTGATAGTGGTGGTAAGTGCATTGATCTTGTGTAATCATGAGGCGGGAAAagattttatgaaatatttaccAGAAACATTTATTGGGGTTTTTGAGAgattatacatttttgtatttaaaattgtataaagTCATTGTAAAATCACGTGTTCTGTTCAGATGTGAGGAAGCCCAGGTTAAAGTATGGAAAGAGGGTCTCGGTGAAGGTGTCCCTGAAGGTATAGAGGTGCGTCATGCTCTCTGCGTTATAAAACGACACCAGGCCCCTCTTATAGTCCAGATAGACCCCAATCCTGGCCAGCGGCTCCTCCAGGGACAGCAGCGTTGGTGGAGACGTCCCAGCCATATACTGAACTCCATACGACAGAGAGAGCGTCCAGAAGCCGTTTGCAGGCATGGTGTTGATGACACCTTTCCTGGTGACGGATTCACGAGCGACGCCGACGGTCCAGACAGTGCTGCTGTAAACCTCCACCTCCCAGTAATGCCGGCCTTTAGTGAAGCCCTGGCCGCCCATGAGGGACAGCGCCGCGTTGAAGCGTTGAGGATTGTCCTGCACGCTGCTGTTGAAGGTCTGGTATCTCACACAGGTCAGGGAAGAGGTCAGGCTCAGCCAAGGATTCGCAGTTTTGGAGTTAAACGTGATGGCAGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005779 lncRNA downstream 229182 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 351928 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 360500 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1761049 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 2186903 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005562 lncRNA upstream 511011 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1125812 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1125812 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 1125812 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 1125812 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005544 mRNA downstream 24480 40821804 ~ 40826657 (-) True XLOC_003026
TCONS_00005542 mRNA downstream 32001 40787005 ~ 40819136 (-) False XLOC_003025
TCONS_00005543 mRNA downstream 32115 40787006 ~ 40819022 (-) True XLOC_003025
TCONS_00005541 mRNA downstream 59160 40786196 ~ 40791977 (-) False XLOC_003025
TCONS_00005539 mRNA downstream 233570 40616572 ~ 40617567 (-) True XLOC_003022
TCONS_00005546 mRNA upstream 1007 40858104 ~ 40939706 (-) False XLOC_003027
TCONS_00005548 mRNA upstream 56206 40913303 ~ 40939303 (-) True XLOC_003027
TCONS_00005549 mRNA upstream 94600 40951697 ~ 40968095 (-) False XLOC_003030
TCONS_00005550 mRNA upstream 96399 40953496 ~ 40964739 (-) True XLOC_003030
TCONS_00005551 mRNA upstream 203642 41060739 ~ 41156348 (-) False XLOC_003031
TCONS_00005540 other downstream 109690 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 313090 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 330037 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 333539 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005514 other downstream 381743 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005547 other upstream 46024 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005570 other upstream 1112794 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1254475 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 2054836 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 2135749 42992846 ~ 43028806 (-) True XLOC_003058