RNA id: TCONS_00005568


Basic Information

Item Value
RNA id TCONS_00005568
length 1393
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_003038
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41926888 ~ 41940302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGTTCATTAAAACCGAGCAGATGTACAAAAACAAtgcttattattttgtatttctactatatataatatagaaaGCTGATACAGATTTAATTCACATGTACAGTAACAATAGAAATCAGTTCATCTGATGAGCTAAAGCCTGCTAGCCGCATCATAAACATCCCAAACACACACGACTGCttctttaataactcattaactCATATTTTGGTTAACGAAGCACAAATATAACGTTTATCCGTTCAGCTCAAACCTGTAATTGCTGATATTCTTGCTCTATTTCTGTCCATTCACTTTGACATCTCTCCAGTGACATTGTACCCGTCCGCGTTAGCGCTGCTGTGCCGCTTAACTGCCGCTAGTAGGCGCTCCAGCGATTTATATAAGCTCCGCTTCCACCACGTCAGCCAATCACAGCCGAGCATTAGGTTCAGAGGATGACATCGCCATCTGACGACCGGGAGAGTCAGCGAAAATAAACATTAGAGAGTTCGTTGCTTGGTTACAGTACACTAATTATTTTTAAGAGGTTTAGTCGAGATCGACCATTGCTTGACAATTAAAGTTGATTTTCGTAGATAAATGGTTGATTTGGGTTTTTTTAAGCGGTCTGGACTGTAAAGTGCAGTATGCCTTATGTGAAAAGACCCCCGACCGCAGAACCGCTAGTGAAACTTTGGGACAGAAAGGCTCAAAAATATGGACTTCATCACACGGTGTATTCGGTCAATGGAGATCAATACACGGGCGAATGGATGGATAATAAGAAGCACGGAAAGGGAAAGCAGGTTTGGAAGAGAGCAGGAATAGTCTATGATGGAGACTGGAGGTGTGGAAAGCGGGACGGGTTTGGAACTCTAAGCAGGATGGACCCAGAAACCAAAGAGTATACGAGGGTTTATGTCGGGACTTGGAGGAATGACAAGAAGGAAGGTGCTGGGTCTTATTTCTACAGTGCATCTGCGTTTTATGAGGGCCAGTGGAGTGGAGATGAGAGGAGCGGATGGGGACGAATGCAGTATGAGAATGGAGAGCTGTATGAAGGAGAGTGGCTGAGGGACAAACATCATGGGGAGGGTTTGATTTTGCTAGCTAATGGAAACCGCTTTGTGGGCACCTGGAGTGATGGGAAGAAGAACGGACATGGCCAGTTGTTCTTCCTGGACAGAGGGCAGCTGTACGAAGGCTTCTGGGTTGACGATGTTGCTAAATGTGGAAGCATTTCTGATTTCGGAAGAGAAACAGCAGTCAGACCGACAGTCTATCCCATCCCCAAGGTTTGCCTACAGGACTCACAGGCTGTGCTGATGGAGGCACAGGCATATTTCACTGAGGATGAGGAGAAGTCAGCAGAGATCACCGAGTCGGTTCATAAGCAGTATTCACCTTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-152 Is expressed in Kupffer's vesicle; nervous system; otic vesicle; and pronephric duct. Orthologous to human MORN3 (MORN repeat containing 3).

Ensembl:

ensembl_id ENSDART00000033121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 558251 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 1069791 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 1304933 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 1427679 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 1436251 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006124 lncRNA upstream 42607 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 42607 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 42607 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 42607 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 42607 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005566 mRNA downstream 19675 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA downstream 20279 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005565 mRNA downstream 262461 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005564 mRNA downstream 476434 41409264 ~ 41450454 (-) True XLOC_003035
TCONS_00005563 mRNA downstream 476521 41409255 ~ 41450367 (-) False XLOC_003035
TCONS_00005569 mRNA upstream 29126 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005574 mRNA upstream 86983 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005575 mRNA upstream 89218 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005576 mRNA upstream 103918 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005577 mRNA upstream 148965 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005547 other downstream 1023651 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1185441 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1388841 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1405788 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 1409290 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 29589 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 171270 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 971631 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1052544 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1595658 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00638618_00641457.mRNA True 842 mRNA 0.46 5 CI01000158 638515 ~ 641457 (-)