Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005569 |
| length | 1448 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | XLOC_003039 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 41969428 ~ 41980797 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016477 | cell migration | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0032956 | regulation of actin cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0030865 | cortical cytoskeleton organization | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0008360 | regulation of cell shape | biological_process |
| GO:0007163 | establishment or maintenance of cell polarity | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0031982 | vesicle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-280 | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated). |
| ensembl_id | ENSDART00000076575 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005562 | lncRNA | downstream | 600791 | 41368108 ~ 41368637 (-) | True | XLOC_003034 |
| TCONS_00006123 | lncRNA | downstream | 1112331 | 40851137 ~ 40857097 (-) | True | XLOC_003028 |
| TCONS_00005779 | lncRNA | downstream | 1347473 | 40620981 ~ 40621955 (-) | True | XLOC_003023 |
| TCONS_00005521 | lncRNA | downstream | 1470219 | 40498159 ~ 40499209 (-) | True | XLOC_003005 |
| TCONS_00005520 | lncRNA | downstream | 1478791 | 40489637 ~ 40490637 (-) | True | XLOC_003004 |
| TCONS_00006124 | lncRNA | upstream | 2112 | 41982909 ~ 41986276 (-) | False | XLOC_003040 |
| TCONS_00006126 | lncRNA | upstream | 2112 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00006125 | lncRNA | upstream | 2112 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00005781 | lncRNA | upstream | 2112 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00005780 | lncRNA | upstream | 2112 | 41982909 ~ 41986595 (-) | False | XLOC_003040 |
| TCONS_00005568 | mRNA | downstream | 29126 | 41926888 ~ 41940302 (-) | True | XLOC_003038 |
| TCONS_00005566 | mRNA | downstream | 62215 | 41826331 ~ 41907213 (-) | False | XLOC_003037 |
| TCONS_00005567 | mRNA | downstream | 62819 | 41829598 ~ 41906609 (-) | True | XLOC_003037 |
| TCONS_00005565 | mRNA | downstream | 305001 | 41624711 ~ 41664427 (-) | True | XLOC_003036 |
| TCONS_00005564 | mRNA | downstream | 518974 | 41409264 ~ 41450454 (-) | True | XLOC_003035 |
| TCONS_00005574 | mRNA | upstream | 46488 | 42027285 ~ 42039128 (-) | False | XLOC_003041 |
| TCONS_00005575 | mRNA | upstream | 48723 | 42029520 ~ 42039169 (-) | True | XLOC_003041 |
| TCONS_00005576 | mRNA | upstream | 63423 | 42044220 ~ 42087230 (-) | True | XLOC_003042 |
| TCONS_00005577 | mRNA | upstream | 108470 | 42089267 ~ 42108137 (-) | True | XLOC_003043 |
| TCONS_00005578 | mRNA | upstream | 130491 | 42111288 ~ 42131408 (-) | False | XLOC_003044 |
| TCONS_00005547 | other | downstream | 1066191 | 40903121 ~ 40903237 (-) | True | XLOC_003029 |
| TCONS_00005540 | other | downstream | 1227981 | 40741330 ~ 40741447 (-) | True | XLOC_003024 |
| TCONS_00005531 | other | downstream | 1431381 | 40537440 ~ 40538047 (-) | True | XLOC_003015 |
| TCONS_00005526 | other | downstream | 1448328 | 40520823 ~ 40521100 (-) | True | XLOC_003010 |
| TCONS_00005525 | other | downstream | 1451830 | 40516749 ~ 40517598 (-) | True | XLOC_003009 |
| TCONS_00005579 | other | upstream | 130775 | 42111572 ~ 42131408 (-) | True | XLOC_003044 |
| TCONS_00005596 | other | upstream | 931136 | 42911933 ~ 42912047 (-) | True | XLOC_003057 |
| TCONS_00005598 | other | upstream | 1012049 | 42992846 ~ 43028806 (-) | True | XLOC_003058 |
| TCONS_00005609 | other | upstream | 1555163 | 43535960 ~ 43536095 (-) | True | XLOC_003064 |
| TCONS_00005616 | other | upstream | 1737963 | 43718760 ~ 43759532 (-) | False | XLOC_003066 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000158_00651772_00657903.mRNA | True | 2502 | mRNA | 0.41 | 5 | CI01000158 | 650335 ~ 658338 (-) |
