RNA id: TCONS_00005570


Basic Information

Item Value
RNA id TCONS_00005570
length 779
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_003039
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41969428 ~ 41980797 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGTTTTTCCACTCAGCAGTTTCTGCCTACGCCTTGATTTGCTTCTTGTTAAAACACACACTTTTcatgcatcatcatcatccattatgcttgatgtttaacagaaatatgCTCCATCTGTGTTCGACAAATATGTCACCACCGTGTCATACGGAGGGAAGGACATCCAGCTGAATCTCTACGATACAGCAGGCCAGGAGGACTACGATCGCTTGAGGCCTCTGTCGTATCAGGACGTAAACATTGTTCTCATCTGCTACGATGTGACCAATCCAACGTCATTCGACAATGTCAAGATAAAGTGGTACCCAGAAGTTCGTCATTTCTGCCGTGACGCCCCTATTATACTGATAGGCTGCAAGACGGACCTGCGAAAGGACAAGGAGAAGATGAGGAGGCTCAAAGCTTTAGATCAGGCGCCCATCACCTACCTCCTGGGTGAACAGACGCAAAAGGAAATGAACGCTGAGATTTACTTGGAGTGTTCGGCTAAATATAGAGAAAACGTCGAGGACATTTTCAGAGAAGCAACAAAGCGAGCGCTAGCAGCCAGAGCTAAAGCCAGACATCGCAGCAAGAAGAAGAAACACTGCACAGTTTTGTGACCTTTCCTGGAAGACATGCATACATTTTGTATATTCAAACTATGATATGTTATAAACATTCAGGAATCATCTGCAGAGCTTCCGGGAATGTTTAAGACTTCTTGAAggaatattttcaagacactgaGTGCGTGTTTTCAATCTACCCACCTAGCAAGACATACTGTTTGACA

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-050522-280 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

Ensembl:

ensembl_id ENSDART00000141222

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 601254 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 1112794 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 1347936 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 1470682 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 1479254 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006124 lncRNA upstream 3245 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 3245 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 3245 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 3245 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 3245 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005568 mRNA downstream 29589 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005566 mRNA downstream 62678 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA downstream 63282 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005565 mRNA downstream 305464 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005564 mRNA downstream 519437 41409264 ~ 41450454 (-) True XLOC_003035
TCONS_00005574 mRNA upstream 47621 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005575 mRNA upstream 49856 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005576 mRNA upstream 64556 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005577 mRNA upstream 109603 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005578 mRNA upstream 131624 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005547 other downstream 1066654 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1228444 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1431844 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1448791 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 1452293 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005579 other upstream 131908 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 932269 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1013182 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1556296 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1739096 43718760 ~ 43759532 (-) False XLOC_003066

Expression Profile

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