RNA id: TCONS_00006125


Basic Information

Item Value
RNA id TCONS_00006125
length 2685
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id XLOC_003040
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41982909 ~ 41986595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTCTCAATCCGTCCTCAACATTGTTTGATATTCTGCGGTGCTTGGGCAATTGGCTGGTTAACAGCAGTTCTCTCTCTGGCCAATCAGATTGAAGCACCACGGTGGATTCAGCTATTAGAAGCACAGCCTTCAGTTCTTCCTACAGAGAGCAGAAAGAAGGCTGTATGCAGGCGCAGCCATTTTCTCCTACATTGGGACTCAATGGATCTGAGAAGAAGGAAGATGAAATGTTGGATGATATCCCTTtgacatttttacactttttttctctTCCTGGAAACCATCTTTGTCCCAGCAAACTAGGATGtttagaaaaagaaagaaagaaaaacacatgAAAATTGCCAACTGCTTTTAAGGCCCTGCCTTGCTTAGGGCCAATCATTAATCAATAACAAACAAGGCAGGCCAAAGAGAAAAAAGGACGATTGGCCTTTTACAAAAATGCTGAATCACAGATTGGGATTGATGTATTCCTGGTTTTACAATGGAATGGAAGTAAAtccctttgctttttttttagtaatgtaTATCTGACCTTGTGCCAAGGGCAAACCTTCATTTTATAACACTACTAGCCACACAACATCGAACAGAAACTGTTAAATACGACTTTGAACATACATAATTATTAATACACTAGCAGAGATATTTACCTTAACATTTTGTTGAAATAAATCTATCAGGCCTATACGATGGAGAAACGGGAAGGTTTTCATTCCCATCTTCGGATCCTTTAACACACTGGCTTTAAAGATGGGGGGTTGGGTTGCAACGCCTAAAAGGAAGAAAACGACAATaaccattttctgccgtctttttCGACATAATTCACCATTTAACACACATATCTGCGCAGTCTCCAGCGAGTGGAGCTGATGGAAATCTTGAGGCACTTTTAGATATTGCAATATGCAAACAAtccctctctttctcttcctGAAGACAGAATGACAAGAGAAATTCACTCGTCCTTCACCACTGAGAGGGATTTCCTTTCTCTTTACGAAGGCGACCTCAGAAATAGCCTGTTGTTTAATGGCTTGTCTGCTGTTCTCATTTTCAACATGGCGTCTTCACAAGGACATCATTGTGGAAAGGAAAGCTTGCTGCGCCATTTATGGGCGAGGCTGTCAGTCTGTCGGTTTCTACTGACTTTGCCTTTTAATACGTGGCTATCATTGCAAACAAATCGACAAGATGTGCTCGCTCTTTAAGAAAGCAGGATATTGCACAAAAACTCGCATTCATTTCTTGTGCGTAAAGCGCGCCCTCGACGCTAAGCTCTGGAAACCCTGTGGCACAAAGCACACAGCAGTAATCTGAGAGCTTGGACGCCTGCCGCGAAATGACTGCACCCACCTAACCATTTAAGGTCGGAGAAAGAGTCTCAAACACTGTGTGGCATTTCAATCAGCAAGTACAAAGGGAATATCCAGTCCTCTGTGCTCTCTCTCTCGTCCCCCTTTCAAGAACATTCGGCGCAGTTTATTCGCCAGCCATTTCAAAGGAGCATTTGACGTGATGCATGCAGGATTTGCGCACTGCTTATAGCTTTCTCAGATCTTCTGCTGAATTTATCACACTGTTGCAACACATACCGGTATGTGGTATGCAAATCGTCGTGTGTTCGCACAATTTATGGTAGTGTAAATCTTCTCAGTTTATTCGGATATTATTAATTCCCAAGTAAATCATCAGTggaatttgattttattattttttaaatctctatTTCCCCTTTTTCTGTGCGTTTTGGGGCGACGCCAATTCCAATTTATCAAGCAGAATTGTATTGCGCAAGGAAACGCGCCATCTGTTTTCCGCGGTTAGGATTCACGCTTGGTCTCTGCATGCACACCATTACTATTCTGTCTCTCTGCCATAGTCTAAAGTAGGACTGGTGTCTGAATATGCTAGAAAAGAAGGACTGGAGACGTGGTGACCGAGGCTGAAGTGGGTCATGAGGCCATTTTAGTGCTGTTTAATTAGGAAAATCCTCTTTATTTTCGTATCCTCCGAACGTAAGCTGTTTCTAAGGGCAGGACAGAAGGGCTAAAACCAGATCAtcagtttatatattttagcTAGTTGCATTTTTTCTCTTTCAACTCTATGTATAGAGATGTGCGCTTTCATTTCTGTTCTGGATAGCTGGAGAGGATCTTCGACATTAATCATAGGCTATAAATCTCATAGATCTTTAAGTaggctatatttttattttattgggaaCAATTCCCAGcactatagcaaaaaaaaaaatacattttttaaaagtattctgtaggcttttttaaaataatttttaaaacgtTATGGAAACATGTGAAATATTGCTTAATGTATACCATGTCTGTCTTTATTGTCTATTAatgccattttaatgtcaatcCACATGAAATCCGAGGAAAAGCAGCTGATCCATACACTGTTCTCATTTGCATTTCTCACGGTGGGTTTTTCTCTTATTTATTAACTATAATAAATGTGGATTGTAATCTATTTTGTGTAGTATGTATGCTTGCAATAAAATGCTGCACTGACCTGCTTTTATATCGTAGCCTAATAAAGACTTTGTGCTTGCATAAATGATGTCTTGTATTTATTGACAGCTGAGTTTGCTTGTAGCCTTCTACTTTCTTGCATCTTCACCCAGTTAGTCTTTTCCTCGAAGTcac

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 614272 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 1125812 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 1360954 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 1483700 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 1492272 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005583 lncRNA upstream 213370 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005784 lncRNA upstream 327276 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 484253 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 484253 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 812752 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005569 mRNA downstream 2112 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005568 mRNA downstream 42607 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005566 mRNA downstream 75696 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA downstream 76300 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005565 mRNA downstream 318482 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005574 mRNA upstream 40922 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005575 mRNA upstream 43157 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005576 mRNA upstream 57857 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005577 mRNA upstream 102904 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005578 mRNA upstream 124925 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005570 other downstream 3245 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1079672 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1241462 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1444862 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1461809 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005579 other upstream 125209 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 925570 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1006483 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1549597 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1732397 43718760 ~ 43759532 (-) False XLOC_003066

Expression Profile

//