RNA id: TCONS_00005576


Basic Information

Item Value
RNA id TCONS_00005576
length 6027
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_003042
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42044220 ~ 42087230 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGAGCCATCTTGTTTTATATCCGTCCTAAGCCCGTTTACCGAGCCAGAGGAAACAGCTATGGATTATAACACTATTTCCCAAACGTAGACGCGTGAAATAAAGAAACCCGAGCACCGAACCTCCTTTATATTCGACGGAATAAACCGAATGGGTGTTGATTGTGATTAATCGGTGCATTTTCTCTCGCACATTTTCTCCGGTGTAAGATACCATGAATGGAGGATAAATGTTGCCGAAGGCTGACAGCGGTGGTTTTGTGCTTCTCCTCTTCATTCTGACAGTAACAGACCCGCCAAGGACAGGTCCGCGGCTCGCTCTGGCCAGACTGTTGACAGATCTGCGCTGCAACCCTGGCCAGTTTGCCTGCCGGAGTGGAAAATTGCAGTGTATCCCGTCAACCTGGCAGTGCGATGGCTGGACGGCCTGCGAGGACAAGAGCGATGAGATAGACTGCCCTACTATAAAAGAGGAACGCTATCGATACAGCAATGGCCTGGAGCCGGTCGAGGACGTCATGGGGGTCGCTCAGCCCGTGCGCTTCAACAAGAAGTGTCCGAGCGGCTGGCACCACTACGAGAAAACGGCCAGCTGTTATAAAGTCTACCTGCGCAGTGAGAACTACTGGCAGGCGGTGGAAACCTGTCAGAAAGTCAACGGCTCGCTCGCAACCTTCGGCACCAATGAGGAGCTGCAGTTCATCCTCAAGATCGAGGTGGACTTTGACGAGAACGTGTGCGAACGCAAGGACCAGTGCAAGTTCTGGGTTGGATATCAGTACGTGATCACTAACCAAAACCACACGCTCGAGGGACGCTGGGAAGTGGCTTATAAAGGGTCCATGCAGGTGTTTCTGCCTCCGGAGGGTCTTGAAGCCCTCGGTGAAGCCAATCCCACCCAGGACAATGTTTTCTGTGCTCAGCTGCAGCGTTTCCAGATCAAGAGCATGAATGAGCACGGTCTGCACAGCTGGCATGCAGAAAACTGCTACAAGAAATTCCCTTTCCTCTGCAAGAGAcGACAGACGTGTGTGGACATCAAGGATAACGTGGTGAACGAGGGCTATTATTTCACACCTAAAGGCGATGATCCATGTCTGAGCTGCACGTGTCACGACGGAGAGCCGGAGATGTGTGTTGCAGCTCTGTGTGAGCGTCCGCAGGGCTGTCAGCACTTCCGCAAAGACCCCAAAGAGTGCTGCAAATTCACCTGTCTGGACCCCGACGGCAGCAGTCTGTTTGACTCGATGGCCAGTGGGATGCGTCTGATCGTCAGCTGTATCTCCTCTTTCCTCATCCTGTCTCTGCTGCTCTTTATGGTGCACAGACTGAGACAGCGGCGGCGCGAGCGCATCGAGACCCTCATCGGAGGAAACCTGCATCATTTTAATCTGGGTCGGCGGGTGCCCGGCTTCGACTACAGACCGGATGCATTCGGGACGGGCCTGACACCTCTGCATCTCTCGGATGATGGAGAAGGAGGAGCGTTTCACTTCCAGGAGCCTCCACCACCATACGCTGCTTACAAATACCCAGACATCCACCACCCCGACGACCCACCGCCTCCATACGAGGCCTCCATCAACCCCGACAGCATCCTCTACATGGATCTCGGTCGGGCAGGTGTTCCTCTGTCGTCCGGCCACATGGGCAGCACCTCAGACTCTCTGCAGAGAGATTTCCCTGCGCCGCCGCTGGCCGTCCCGCCACCACTGGAGGAGCGCGAGGACTCCATCGACAGCAGCACAATGCTCGTCTCTCCGGACACACCGAGCGGCTCCGAGGCCAGCATCACGCAGAGCTCCAGCGCGGACGCACCCTCGCTCAGCACCGTGGTCTAAACCCAAAAACCAGACTTCACAACAGAAGACGTGCACTGGGGGTTTTTACTCCACGCTTTTTCACGTGTAAATACTTCCGTCGGCCATTGGTTGAGTCTTGAGGACGAGTGATTTTGCACTGGCAAAGACGTTTGTTTGATAAGGAAACGAGTGGACGTCCCGTCACTGGAGTCCTGTCCTGCACACTGACTCTTTCTGGCACAAAACAAGCAATGTTATTTTTCCTTGAGCGCTCCAAACAGACCCTTCTGATGATGCGTTTTTATGAAGGATCTGTTTGGGTTTGAGCAAAACTGTGTTCTTAATCTGCAATTCTGTGACGTCTGCTTgacttcttgtttattttgtctgTCAGGTCAGTAACACAAACTCTAAAgctctaaaaaaaatatataataatattttacattgagGTACGAGTCGGTTTTGGGATACTTTTAAACACCCTGCTGTGACGTGATGATGATGTTTGTGGAGAAGATTTCCATCAATACACTATTCGTTTTGTTAACTTTTCATTTCATCGATCAGTTTGGCATCTAAAAGGATGAATCTTATTAAAAGGGCCAAGAAATTACTCATTTCCACCCAAAGCAGAAACAAAATGTGATGTTACCTACTCAAACAAGCCCAAATTATGTTAACTTGGCTTTAATGGGTCACATATTCTAAAGGAAGTCCCTTTTTCTTTACAGTAATGCTGgaaaaaatgttacaaatgtgaATAATTTCACtaaaaatgaatattgtgtcattatttactcatccacctcgtttcaaacctgtttgagtttcattctcctgtttaacacaaaagaaaaaaaaggaatgttggaaaaaagggggcccagctggcatttctgtgtggagtttgcatgttctccttgtgttggtgtgggtttcctccgggtttcccccacaatccaaacacattcgctataggggaattgagttaacaaaattagccgtagtgtgtgtgaatgagagtgaatagatgtttcccagtactgggttgcggctggaagggcatccgctgtgtaaaacatattctggaatagttgacatttcattctgctttggcgacctctgaaatagagactaagctgaaggaaaatgactgaatggatGAATATTGGGGGAGatcagccattgactttcatagtatttgttttgttcttactatggatgtcagtggctgctcTTATTTATCTTTTGTGTTctttacagaagaaagaaattcttaTATGTTTAGAACCACATGAGTAAATATGaggaaatttcatttttgggggtTGAGCTGTCtcttaaaacataattttatggCTTTGTGTATTACTGTAGTGAGTTACTTTTTTCATTCTTGTGATGATAATGGGGTTTTTTAATGGCACATGGTGTTTCAAAAAAACTACCTTTTCATTACCGTAATGCTAAAAGAAACAATGTTATATGTTATTATACTGTACTTTTGCAGTCATATGTGCTGCTGATATTTGttattaacaatgtttttttttttcattttttaaagcgAGGTTGATTTTCAATACGTTTAATTAATgtcaggatttattttatttttaagcattaCAGTAATGACTGATTGATTTCATTCTGGTAGTGTTTCTTTTTACagtaatgaaatatttttattctggTAGGGTTTTTTAGTATTACGGTAATGACTTTGTCATCTTTCtggtggagttttttttttaggaaattagtattttttttcattatggtAATGACTTATTGTCATCTTTCTggtaatgtttttttcatttacgGTAAGGACTTTCTCATTCTGGTAGTGTTTTTTTCATTATGGTAATGACTTTCTAATTctggtagtgttttttttttcattacggTAATGACTTCTCATTCTggtagtgtgtttttttttcattacggTAATGACTTTTTCTCATTCTGGTAGTGTTTTTTTTCATTACTGTAATGACTTATTGTTAACTTTctggtagtttttttttcattacggTAATGACTTTTTCTCATTCTggtagtgttttttttctttatgaaaATGAGTCATtctgatattgtttttttttcattacggTAATGACTTTTCATTCTggtagtgtttttttattacGGTAATgacttattgtcatgtttttgGTAGTGTTTTTTCATTACGGTAATGACTTTTTCTCATTCTGGTAGTGTTTATTTTCATTACGGTAATGACTTTTTCTCATTctgatagtgtttttttttaattactgtaatgACTCATTGTCAACTTTCTGGTAGTTTCTTTCATTACGGTAATGTCTTATTGTTTTCAATTTGGTAGTGTTTTTtattacagcaggggtgtccacactaggtcctggagggccagtgtcctggaaaatttagctccaaccctaatcaaacacacctgaaccagctaatcaaactgTATTACGGTAATGACTCATTctggtagtgttttttttttcattacggAAATTTTCATTCTGGTAGTGTTTTTTATTACCGTAATAacttattgttttcattctaGTAGTGTTTTTTTCATTACCGTAATAACGTATCGTTTTCTTTTtggtagttttttttgttttttcattacagtaatgacttattgttttttttcaagtagtgttttttttattatggtaATGACTTATCGTTTTAAATTCAGTAGTGTTTTTTCATTACGGTAATGACTTTTTTTcaatgaaatatttttgttttggtaGTTTCTTTTCAGCATTACAGTAAAGAATTATTGTTTTCATTCtcatagtgattttttttttgcattacagtAATTGTTTCCATTCTGGTAGTCATAGTGAATTATTTTCATTCtggtaatgattttattttatatattgaaaaAAGATTCATCCAAAAACTCCACCAGTACTAtagaattttgtgtgtgtgtgttttgaatgtaAATGTTTCACAAAGCTAATTTTTGTCTGTCAGACTGATCTCAAACAGTGTGCTCAAGCAAATCACGCTGTTTGTAATTAATACTTCATGTTGAGCTCCTGAtttttggatttgtgtgtttggAATAATGAGGTGTATGTTCTGTGTGTGAGTTGTTCGCACCTACAACAAGTCAAATGTCTTTTTGATGTAAATCACTAACAAGTAAAGCGTTTGTTACTTGATGCAAACTAAATGGGAGCGTGTATTTGCACACGCAAGTGCATAAATGTACGTAAAAGCAAGACgctttgtttttttagttttagtcaatTCTCACTTCACAGACTACTTATTTTTCCATTTGGACAGCTTATTTCAAGTGAGTGAAATATATGTTTAATGGAAAATATAAGTTATGAACTCAAGGTCGCTGAAATGAACACTCTTTTATGGacgttgttgttattattcagACTTTTGTAGCATATGCACACTTCTTTTTCCTAAATGGAAATGCAACAAAAAGCCCAAAACAAATGACAATCAGGCATTTCATACAAAGGATGTTTTGGCACAACATAAGCCTCAAGTGTAAGTGttgtgcttaaaaaaataatgcaaagacgagtaaaaaaaaactaaacagatcCCAGTTTCCATCACCAGCACCGAAAAAATCAGCCGGAGGTTTTCCATCATCCAGGTCAATGTTCTTTCACtgtacagtctttgtttttgaatTTAATTCCAGGGTTTCATCGGCACAGACAATCCTGTGAACGTCTGTTTGCgttatttttgtgtgtatgtgtgtgtgtgtgtgtgaactgtaaAAGTTGGCATGAATGTTTTGCAGATGTGTGGTTGCATGTTTTACTCTTTTTGAGCATGCAGAGAGGACTCTCTTCTCTTCTGCTGATGTTACTTCATTTCTGCTATGCTTACAGACTGAGCTTTGATACACCGGTACATCCCAATCCTCTTCCTAGCTCTCATTTGCAgacgtttgttttatttaataattataatagcaaTGAAAAAAGTAGACAATTCTAGATAGACTTTATGGTGCAATGAGGAGAAAATAAAAAGCATCATGAATTGTTTTCTGTAGAGTGCAGCAGTTGGTGAATTTGTCGATTCttggttgttatttttttaatgtcatgTACTGCTTTTTTCGTcagagggcttttgtttttctttattctgAAGTAGATGTACATCTAATCAAATGCCaaataaattgtacaaatgaagcACA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-404 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in adaxial cell; polster; and retina. Orthologous to human DGCR2 (DiGeorge syndrome critical region gene 2).

Ensembl:

ensembl_id ENSDART00000063071

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005780 lncRNA downstream 57625 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 57857 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 57857 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 57857 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005783 lncRNA downstream 57857 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005583 lncRNA upstream 112503 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005784 lncRNA upstream 226409 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 383386 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 383386 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 711885 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005575 mRNA downstream 5051 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005574 mRNA downstream 5092 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005569 mRNA downstream 63423 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005568 mRNA downstream 103918 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005566 mRNA downstream 137007 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005577 mRNA upstream 2037 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005578 mRNA upstream 24058 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005580 mRNA upstream 47026 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005581 mRNA upstream 108502 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005582 mRNA upstream 108505 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005570 other downstream 64556 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1140983 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1302773 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1506173 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1523120 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005579 other upstream 24342 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 824703 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 905616 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1448730 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1631530 43718760 ~ 43759532 (-) False XLOC_003066

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00694202_00704844.mRNA True 2046 mRNA 0.54 11 CI01000158 693923 ~ 704844 (-)
bowfin (Amia calva) AMCG00018754 True 1891 mRNA 0.52 12 CM030135.1 19687584 ~ 19701791 (+)