RNA id: TCONS_00005577


Basic Information

Item Value
RNA id TCONS_00005577
length 2510
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_003043
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42089267 ~ 42108137 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATAAGAAGAAGACGAAGAAGAGGCTTTTCCTGCATGCGATGTGACGACGTTTTGTTGATATTACATTGATTTTCGTTCTCCTTTATATCGATAAGATCAATTTAACAATCACCATTTACCGCAAAATATCGTAAATATACTACATATGTTGTCATGTAGATAGAAAGTAAAAGAGAGAGCGTACTTAGCGCATAGCTAACGTAAACAACTTGCGCAATAGGAGTTTAAGTCgctttaaaataacagtttcgTTCATTAAAGGAGAAACATGGCCGAGTCTAGAGAGAAAGCTGTGTGTTTGAGGTCTGATGTTACTACAGTCGCTGTCAGGAATCCTGTGGAGGAGAGCAAAAAACCCAAGAGGAAGATTCTCGATGAAGAACAGTATATAGAGAGTTTGGAGAAGATCATCCAGAGGGACTTTTTTCCTGATGTCTCCAAACTTCAAGCGCAGAAGGATTATCTGGAGGCGGAGGAGAACGGAGATCTGGAGCGGATGAGGGAGATCGCCATCAAATACGGCTCTGCCATGGCCAAATACACACCACGCACTTATGTGCCCCATGTGACACCTTCAACATTTGAGACTCCTGATGGCCGAAGTGCATCTCCTTCATCTTCACAGAGTAAAAGCAGAGCAGCCAGAGAAGATGGAAAAGATGGTGAAAAGGCATCAGAGAAGGATCTTCCGTCCTTGGATAGATTTCTTTCTAAAAACACGAGTGAGGATAACGCCTCCTTTGAGCAGATAATGGAGCTTGCGGAGGACAAGGACAAACTGCGGCACGCGTGGCTTTATGAGGCTGAAAATGAATACAAAGAGAGACACGAGCAGAACCTGGCTCTGCCATCCTCGGAGAAACAGGCTCTGGAGTGCACCAAAGCAGGACTGGAAACATGGCAGTACAAGGCCAAAAATTCACTGATGTATTATCCTGAAGGTGAGAAGGACGACACACTCTTCAAAAAGCCACGGGAGGTTTTGTACAAGAACACACGGTTTGAGGACGACCCTTTCTGTAAAGCCCTGAACAAATCCCAGATCCAGCAAGCTGCTGCGCTCAATGCACAGTTTAAACAAGGTAAAGTCGGTCCAGACGGGAAAGAGCTTCTTCCTCATGAATCCCCCAAAGTGAATGGTTACGGATATGAGGGCGCACCGTCACCCGCTCCTGgTGTTGCAGAGTCTCCTTTAATGACGTGGGGTGAGATTGAAAGCACCCCGTTTCGTCTGGAGGGCTCAGATACTCCTCTTGTGGAGAGAAGCCACGGTCCATCATTCAAGATTCCAGAGCCGGGCAGAAGAGAGCGTTTGGGGCTGAAAATGGCCAATGAGGCTGCAGCCAAAAACCGAGCGAAGAAACAGGAGGCGCTGCGTAAAGTCACTGAAAACCTCGCCAGCCTCACACCGAAAGGATTGAGCCCCGCAGCCCTGTCTCCTGCTCTCCAGCGTCTGGTAAACAGATCGTCCAGCAAATACACAGATAAAGCGCTGCGGGCGAGCTACACGCCGTCTCCTGCGCACAGAAGCCTCGGCGCCAAAACTCCATCTGGAGGCCTGACGACTCtcacacccacacccacaaaaACACGCACACCGGCCAGCCAAGACCCGGCCTCCATCACAGACAACCTGCTGCAGCTGCCCAAGCGGAGGAAAGCCCAGGATTACTTCTGAAAACACACTGGAACGTGGCCTGTGCActgtatttattatcatttttttaattacgtttattttaaaaaatgtgaaaacgaTTGAATAATGATCGTTTCAGACAGGAGTTTtgtcagtaacactttacaataaggttgtattagttactGCATTTTCTAACATGAACAGCAAGacaattattacagtatttgtattcagttgttagttcatgttaacctacaataactaatgttaacattaatgcgtTGGTAAATGCCGAgcgatgattaataaatgctgtacaagtatcgttcgtaattagttcatgttagtaaatacaaaactaatgaaaccttactgtaaagtgtgacgATTTTAAAACCTGCAGGTTTTTGGGGtcagactttacaataaggtttcattagttaatgtatttactaacatgaaaaatacagcatttattaatcatagttcaacatttactaatgcataattTAAATGCTTGTTAACGTTAGTCACTGTAAATTAACATGAACAACTTGACTTAGCatgattaaataatgtaataaatgcattgttcattacgtgttgatgttagtaaacacattaacgACTACAaccttttttaaagtgttttctttactttattttgttttatatgtttgttttagCTAGCATACACACGTTTGATAGTTTCATTTGTCATCCACATCGAGTGATTCAATAGGGTGAATCATTTGATTCACTTGAACTTTGATTCTTGATTCATGTTGAACAAGGATGATTCAGTGCTCCTGAATATTGATCTTGTAAGGTCTCAGGGGcacaattaaaagaaaatgtacaCGCA

Function

GO:

id name namespace
GO:0071013 catalytic step 2 spliceosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2843 Predicted to be located in nucleus. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human ESS2 (ess-2 splicing factor homolog).

Ensembl:

ensembl_id ENSDART00000132976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005780 lncRNA downstream 102672 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 102904 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 102904 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 102904 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005783 lncRNA downstream 102904 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005583 lncRNA upstream 91596 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005784 lncRNA upstream 205502 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 362479 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 362479 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 690978 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005576 mRNA downstream 2037 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005575 mRNA downstream 50098 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005574 mRNA downstream 50139 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005569 mRNA downstream 108470 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005568 mRNA downstream 148965 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005578 mRNA upstream 3151 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005580 mRNA upstream 26119 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005581 mRNA upstream 87595 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005582 mRNA upstream 87598 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005584 mRNA upstream 392758 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005570 other downstream 109603 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1186030 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1347820 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1551220 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1568167 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005579 other upstream 3435 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 803796 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 884709 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1427823 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1610623 43718760 ~ 43759532 (-) False XLOC_003066

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00709034_00714645.mRNA True 1811 mRNA 0.47 10 CI01000158 708639 ~ 714645 (-)