RNA id: TCONS_00005579


Basic Information

Item Value
RNA id TCONS_00005579
length 1917
RNA type nonsense_mediated_decay
GC content 0.47
exon number 10
gene id XLOC_003044
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42111288 ~ 42131408 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTAGTGGGTGGGGCAGATTCGTACAATGCAGGAAGTGTTACGATTTTACAGCTAACGTGATCACATCAAGCTTTGTTTTCACAGTGTGTAAATATGACGACAATATTTGTCATAAATAAATCGAAGCGTCTTTTCAAAGCATAGAGGAGCGCGGAGGAATCAGGAATCAGCATGTCTGAACACACGGACTGCAGTGTGTCGTCAGAGGATCGGGTTCGGGCTCTTACTAAACTGGGCAGCTCAGTGGACGTGAGCGAGGATGTGCCGCCGCGCAGATACTTCCGCTCCGGCATGGAGATCATCCGCATGGCCAACATCTACGCCGACGAGGGAAACGTGGAGCACGCCTTCATCCTGTACAACAAATACATCACgTTGTTTATTGAAAAACTTCCCAAACATCGGGAATGATCCGCCGCCAGGAGCTGGAGAAAGAGCGCCGGCGCATCGTGCAGGAGTTCAGCATCCCAGTGTCTCCCACTGCTCCAGATGTACTGCTGCCGGATGTACACGGACCCCCACAGGCCTCACTCTCACCCCAGACACCCCCTGCAGGAGCCACTAACCATGAAGGCCTGCCGGCGTTTGACCGCTCGCTCAAGCCCAGTGTCCCAGTCAGTGCAGGACACAGTGCGTTGGTTAATGGCTTACGACAGCTCTTTGTGCCTGCTGAGCTTTGCCAAAGGTTTCTAAAGCTGGCAGAAACGAACACTGCTAGGGCGGTGGAGACCTGCGGGATCCTCTGCGGAAAACTGATGAAGAACGCCTTCACCGTGACCCACGTGATCGTGCCCAAGCAGTGTGGAGGACCAGATTACTGTGACACGGAGAACGAGGAGGAACTTTTCCTGATCCAGGATCAGAATGATCTCATTACGCTAGGGTGGATTCATACGCACCCGACGCAGACGGCCTTTCTGTCCAGTGTGGATCTGCACACACACTGCTCCTATCAGATGATGCTTCCAGAGTCCATAGCCATCGTCTGCTCGCCCAAATTCAATGAGACGGGCTACTTCCGCCTGACTGATTATGGGATGGACGATGTCGGTACCTGCAAACAGAGAGGATTCCACCCTCATCCGAAGGACCCGCCGCTCTTCGCTGCTAGTCATCACGTCAGCATCACAGACGGCAGCGTGACCATGCTGGACCTGCGGTGATGTCATCGCTGCTGCTGCTTCAAACACGTGCCTTTGCTCTCGATCTTACAGCGACAGATAAACTTGCCAAGAAGCTCCTAACTGGCCGGAAACGTCCCTGCGCTGCACACCGGGCCTCTGTTATCGTGTCTTACAAGTCTGTATTTATACCTTTAATTCTGAAACATATCCAGATGTGACCAATAAGAGCCTAACGATGAGCTGTGTGTCATTGCAGAGCATAACGGAGACATGCATGCAAAGGCTTCAGCTTTTATTTGAATTTGTAGACACACTTCAGCTATAAGCAAACCTTTCagtattctttaaaaaatgtcaaattaaagctTTGTTTTCCAATGCAAATATGTAAACATTCTTAAATTAATCAAGCAGAAGTTTTGCTTTCATAGAAATGCATCAGAATGAACTGTTTTAAACCTAAACGCCGGAAATCCATCGgttttttgctcattttaagCATAAATGTGCTTAAAATTGATATATTTATTGATATCTTCATTCATTTGCTAGCCGTGGTTTAAGGATTTTTACAGATTTGTACTGTAAAGCATGACGGCAATAGTAATACTATAATATTTTGCATTGTTGTCGTTTGCCGTTCCATATTGAAGCTCTTTGAAAGACTGAAGGTTTAGCCGTGCACTTAACtctgttctgttttatttaaatattctgaTATTTTCCTTAGCTGTGCCTCTGTTAGAGATGTTTCAGATCTCCTTGTTGATTAAACAGACCCTCCTCTGGCA

Function

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0005768 endosome cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1551 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cleavage furrow and endosome. Orthologous to human STAMBP (STAM binding protein).

Ensembl:

ensembl_id ENSDART00000073631

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005780 lncRNA downstream 124977 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 125209 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 125209 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 125209 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005783 lncRNA downstream 125209 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005583 lncRNA upstream 68325 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005784 lncRNA upstream 182231 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 339208 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 339208 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 667707 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005577 mRNA downstream 3435 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005576 mRNA downstream 24342 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005575 mRNA downstream 72403 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005574 mRNA downstream 72444 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005569 mRNA downstream 130775 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005580 mRNA upstream 2848 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005581 mRNA upstream 64324 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005582 mRNA upstream 64327 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005584 mRNA upstream 369487 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005585 mRNA upstream 546483 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005570 other downstream 131908 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1208335 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1370125 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1573525 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1590472 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005596 other upstream 780525 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 861438 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1404552 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1587352 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1603878 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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