RNA id: TCONS_00005580


Basic Information

Item Value
RNA id TCONS_00005580
length 4992
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_003045
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42134256 ~ 42147318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCGCCGGCAGCGGCGCAGCCAGCGAGGCACACTGTAACGTGGAAGAGGAGCAATCTCAGAGAAGTGTATGGCATTGAGAAGCACTGAACAGCTGAGAAAACATGGCTCCAAATAAGAAAAATGGCGTTCCTGACAGaTGGACTGACTACACATCATTAGGTAAACGGATACCTGGTACACGATTCATCGCCTTTAAAGTTCCCTTAAAACAGTCTTTCAGACGTCATTTATCAGAATCAGAAGTCTTTGGCCCGTTTGATCTGGTGCGTTTGTTGGAGAAGGAAAGACAGCAGCTGGGTCTCATCATCGATCTGACCTTCACCACCAGATACTACAGAGCAGAGGATTTGCCAGATACGCTGTACTACATGAAGATCTTCACAGCAGGGCATGAAGTGCCAAATGATGCCACCATTCTCAGCTTCAAGAAGGCTGTTAGACATTTTCTGCATGACAATGCAAGCAATGATAAGCTGATTGGTGTTCATTGTACACATGGTTTGAACCGCACCGGTTATTTAATATGTCGATACCTAATCGATGTCGACGGGATGATGCCGCAAAAAGCAATTAATTTGTTTAATGAATCAAGGGGACACTCGATAGAGAGGCAGAACTATCTTCAAGACCTGACCACGGGGCCCAAGAGAAGTAATAATGGGATGGATGAACCCGACCAAGAGCCTGTTCGGGGGCTTGCGAATCTGGCGCTAAACGAGGCTCCTTCTCATCAGCGGGAACTGAATAACTACAATCAGAGATCATACGAGCGGCACAGGGACAACCGGGAGGACTTTTTCCCGTTTCACCAGAGAAACAGCATGCCTCGGTTTGGGCCTCCAGAACATCAGTCTTTCCGTCCGCCACCGTTTACTCATCCACCACCAGAAAGAAGATCTTATTATCCCAACCAGAGCCTCAGTGGATTTCACTGCAGTCCTTCAAACCAGTATCCGCCTCCGTTTCCCTCTTACAGGTTTGGAGAACCGTACCATCACCCATATTTACCTGCGCCAGAGCCCACGAGACCTCCAGGATCTCACCGCAAACATCGGCATCGATATAGGAAGGACAAAACACATCGCTGAAAAGGCAGAAAATGAAGCTGGTGTCTAAAAGAGTTGTGGTTTATTGAGCTCTGCCAGCTGATAACACTTTCTTTTATATTGGGTcattttatgcagcaaatgcatATATTAGAGTCAAAAAGATAAACTACTtggttaaaatgagctgaaacaacacactatttatagttttcttttgtttttgggacaacttaattgttttaatttgtaaacAATTAAGAGTAACACTTTACGCTGGAattaatgctgggttccacacaattccatcATGTTTTCCAGACACAAGCCTAGTTAACTCTAGTTTTTACACCTTTAAGTcgattgaacattaaaaaattaagttgtccccctaaaaaaacttattttaaatgagtagtttaaacaagtagccatattttgtgtagaataatggtccattagttaacttttaatgtatttactaacattaacttgGTATAAATGatcttgtaaagcatttgttaatcatagtttaacatttattaatgcattattgacatcaaaattcatgcttgttctcattagttaatgcaccaatGTGAGTTTACATGATCTAAAGTTATTTAACTTGACGTTAACAAAAGTTAaacaaatgtattactaattgtttgttcctgttcgtaaatacattaactaatagatcattattttaaagtgttacccgaacttaattgatttgtgttgggacgacgtgaattgtgtggaacccagcatttattttacactaaaatatatatatatatattcctgcatgttcaaactactaatttaaaatgagcttaaacaacacaattatggAGATTTATTTTGGCGaggaaacttatttttttttatgttcaatccacttaaatttgttatgttgcttttaatggatttgtgtttggactagtgttgtcatgatactgaaatTCGGTACCAAgcgatactgaagttttaaaaacgtgcATTTCCCGCTAatatttgagcactgttgagcaccTTCCTAAACAGCGCTGATTCGCCATTGTGTTCTCGTGCTCAACAgtaatgactgtgattggccgtgaagctcatcagttcatcgaactcactgctgtttactgagtgtagccacagatacagggacactggagcattttaaagcagcgattcatcagcggatcgctcatatgtcagcttatagacaaaccagctgattgacattactttaaaatgcaaatcaGCGCTTTTTAGGaatgtgctcaaatgttagcaggaaatggaggTTTATAAAACTTTTGTATGGATCGGTATCGAATTTCAGTATCGTGACTACActagttgggacaacatgaatgtattagtgttgtcacaatactggaatacGATACCAAgcgatactgaagttttaaaaacctCCATTTTCCGCTAATGTTTGAGCGCTGTTGGGacgttcttaaacagcactgattggccattgtgttcacatgctcaacagtaATAACTGTGATTGGCCCcaaaggtcatcagttcatcgAACTCACTGCTGTTTTTCTGAGTGTagccacagatacagggacactggagcattttaaagcagcGATTCATCAGTGGATCGTTTGTAAATCAGCTTATAGTCAAACCAGCAGATcgactttactttaaaatgcaaatcaGCGCTTTTTAGGaacgtgctcaaatgttagcaggcaATGAAGGTTTTTAAAACTTCTGTATGGATCGGtattgaattccagtatcgtgactacactagttgggacaacatgaatgtattagtgttgtcacaatactggaattcgatgCCAAGtaatactgaagttttaaaaacatccatttcccgctaGTGTTTGAGCGCTGTTGggacgttcttaaacagcgcttatttgccattgtgttctcgtgctcaacagaaatgactgtgattggccgtgaagatcatcagttcaccgaactcactgctgtttactgagtgtaaccacagatacagggacactgcaGCAATTTAAAGCcttgattcatcagcggatcgctcgtatgtcagcttatagacaaaccagctgatctaTGTGACTTTAAAATGCAAATCGGCGCTGTTTAAcaacgtgctcaacagcgctcatgTTATCAGGAAATGGaggtttttaaaacttcagtctcGATTGGttccgaattccagtatcgtgactacactagttgggacaacatgaatgttttagtgttgtcacaatactagAATTTGACACCAATCTATATTGAAGTTTTAAAAATTTCCATTTCCCACTAATATTTGagtgcgttcttaaacagcgctgattcgctattgtgtttacatgctcaacagtaatgactgtgattggccgagaagatcatcagttcaccgaactcaccactgtttactgagtgtaaccacagatacagggacactgcaGCAATTTAAAGCCTTGATTCATCAacggatcgctcgtatgtcagcttatagacaaaccagctgatctacgtgactttaaaatgcaaatcagcgctgtttaaggaCACGCTCAACAGCGCTTATGTTATCGGGAAGTGGaggtttttaaaacttcagtatcgatTGTTACTGAGTTCCAGTATCATGATTACACTAGTTGGGACAAAGTGAATGTATAAGTGTGGTCACGATACAGCAATTCtataccaatcgatactgaatgtctatttcccgctaacatttaagtgctgttgagcacgttcttaaacatcagtaataactgtgattggctgtgaaggtcatcagttcaccgaactcaccgctgttcaCTGAGTGTAGCCACAAATACAggaacactggagcattttaatgCCACgaagatcagctggtttgtctataagctgacatacaagtgatccgctgatgaatcaagGCTTTAAATTGCTCCAGTGTACCTGTATCTTTGGTCACActgtaaacagcggtgagttcggtgaactgatgaccttcaaagccaatcacagtcatttcccttgagcatgtgaacacaatggccaatcagtgctGTTGAAGATCGCGCTctaatgttagcaggaaatggacattttaaaaatctCAGTATGGATTGGTACTGAATTcaagtatcgtgacaacactagattgcgttgtgtggaacccagctaaCTTACTCGTTCTATGCCCAATAcacttaaacaattaagttttaaCTTGGACTATTTATgtagggacaacatgaaggaattttgtggaccccagcatttatttacagtatcTAAATGcgctaacactttacaataatagttTATTAGATGGTATAtttaacaaacaatgaacattacatttattacattgattatttatgtttgttaacAATAATATAGTTGTTTGTGATCGCTGACAGTGCGTTAACTATAAAATATTGTTCTTGTTAACTCAAAGTTCATTAATTATTGTTAACAAACATGACTTTAgattttaatgatgcattagtaaatgattaataaatgctgaattgttcttgttagtaaatacatgaactaatggaagcttattgtaaagtgtggccATAAATGCTGCAGATCTGTTGTCATTTGTATTTAAGCTCTCAGAGGTAGACAGTGAATTTTTATTAAGTGTTAAAgggcttgtttttattaattctgtttttattttgtgagcTGATTTGGCCTTTAGCTTAACTTGAGCAGGCTGAAACTGGAAATTGGGCAGCCGTTTTAAATTTGAAGGAATTATTAAACTCCATTGCAAGTGCAATTAcaggttttgttttattgtattttgtacaCCTAATTATAAATCAGCTGAGATACTCGAGCTGAtgcgtgttttattaatttagcgTGGTGCTCAGATGTTCCCGGATTGAGATGAAATTAAAggtttatattcaattcaa

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004651 polynucleotide 5'-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-226 Predicted to enable polynucleotide 5'-phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP11 (dual specificity phosphatase 11).

Ensembl:

ensembl_id ENSDART00000134890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005780 lncRNA downstream 147661 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 147893 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 147893 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 147893 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005783 lncRNA downstream 147893 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005583 lncRNA upstream 52415 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005784 lncRNA upstream 166321 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 323298 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 323298 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 651797 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005578 mRNA downstream 2848 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005577 mRNA downstream 26119 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005576 mRNA downstream 47026 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005575 mRNA downstream 95087 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005574 mRNA downstream 95128 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005581 mRNA upstream 48414 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005582 mRNA upstream 48417 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005584 mRNA upstream 353577 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005585 mRNA upstream 530573 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005586 mRNA upstream 593544 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005579 other downstream 2848 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 154592 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1231019 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1392809 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1596209 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 764615 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 845528 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1388642 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1571442 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1587968 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00726688_00731027.mRNA True 751 mRNA 0.41 5 CI01000158 726688 ~ 731257 (-)