RNA id: TCONS_00005583


Basic Information

Item Value
RNA id TCONS_00005583
length 708
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_003046
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42195732 ~ 42297889 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attaacagttggacaggtgtacctaataaagtggccggtgagtgtataccgcaatatttattgcagggaaaaaaacattgcaatgtcagatttttccaatatcgtgcagccttattattagtgtattatttataattgttgatgtatttttattgttataaaccttttttgttatttatatgatttatttgtaaagtgtattattattgtaCACCTGTTTTACCaggtttaattgtttaaatggTTTATTCTTATTTATGTATAGTACGTTGAGTTACagttgtgtatgaaatgtgcgtTGGAAATAGTTTTGCCATGAAATATCCAGGGAAGCTGAAACCTAAAATCTCCAAACTTCTCTGAAaatctccctctttctctctctccatgcAGAAAGCCCTCGGTGCCCGTGAAGAAAGAGGAAGAGAAAAAGCCTCACATCAAGAAGCCTCTTAATGCCTTCATGCTCTACATGAAGGAAATGAGGGCCAAAGTAGTGGCTGAGTGTACCCTGAAAGAGAGCGCCGCCATCAACCAGATCCTGGGCAGAAGGTGGCACTCTCTCTCGCGTGAGGAGCAGGCCAAATACTATGAACTGGCCAGGAAAGAGCGGCAGCTGCACTCTCAGCTTTATCCCGGCTGGTCTGCGAGAGACAACTACGGAAAGAGGAAGAAACGGAAGAGAGACTGTAAATCTGACTCCCCATC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060900 embryonic camera-type eye formation biological_process
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0010456 cell proliferation in dorsal spinal cord biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030900 forebrain development biological_process
GO:0030901 midbrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation biological_process
GO:0060323 head morphogenesis biological_process
GO:0060847 endothelial cell fate specification biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980605-30 Enables DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including cell proliferation in dorsal spinal cord; negative regulation of Wnt signaling pathway; and nervous system development. Located in nucleus. Is expressed in several structures, including axis; digestive system; midbrain neural keel; nervous system; and posterior neural tube. Orthologous to human TCF7L1 (transcription factor 7 like 1).

Ensembl:

ensembl_id ENSDART00000138594

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005780 lncRNA downstream 213138 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 213370 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 213370 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 213370 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005783 lncRNA downstream 213370 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005784 lncRNA upstream 110807 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00006127 lncRNA upstream 267784 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 267784 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 596283 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 616929 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00005580 mRNA downstream 52415 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005578 mRNA downstream 68325 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005577 mRNA downstream 91596 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005576 mRNA downstream 112503 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005575 mRNA downstream 160564 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005584 mRNA upstream 298063 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005585 mRNA upstream 475059 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005586 mRNA upstream 538030 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005587 mRNA upstream 540666 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005588 mRNA upstream 541864 42744696 ~ 42751641 (-) True XLOC_003051
TCONS_00005579 other downstream 68325 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 220069 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1296496 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1458286 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1661686 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 709101 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 790014 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1333128 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1515928 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1532454 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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