RNA id: TCONS_00005784


Basic Information

Item Value
RNA id TCONS_00005784
length 287
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id XLOC_003047
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42313639 ~ 42355104 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATATGGCACTTTTGGGCAGATTTCGACTCCTGCCGTCAGCTCCTGAGTCTTTGTCTGTGGATAAGATGACCCAGTTTCACCGTCGGTGTCGAGTTGCAGCTCCGGCCCTGCAAACACATCTGCGTATCGGACACCTCAGATGAGCAAACTCCAGCCCGTCTCAGGCCTGTGATGAGGATGCACAGGACCTGATTGAGGCCCACATACATCACCGAGGACAAAGGCTGAATTCTTCGCCTGCATACGAGAGGAAGCCCTGCAGATGCCAGAGCTGATAAAGTGAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005583 lncRNA downstream 110807 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005780 lncRNA downstream 327044 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00006126 lncRNA downstream 327276 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA downstream 327276 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA downstream 327276 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006127 lncRNA upstream 115512 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00006128 lncRNA upstream 115512 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00005591 lncRNA upstream 444011 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 464657 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA upstream 464852 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00005582 mRNA downstream 15750 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005581 mRNA downstream 76335 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005580 mRNA downstream 166321 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005578 mRNA downstream 182231 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005577 mRNA downstream 205502 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005584 mRNA upstream 145791 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005585 mRNA upstream 322787 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005586 mRNA upstream 385758 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005587 mRNA upstream 388394 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005588 mRNA upstream 389592 42744696 ~ 42751641 (-) True XLOC_003051
TCONS_00005579 other downstream 182231 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 333975 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1410402 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1572192 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1775592 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 556829 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 637742 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1180856 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1363656 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1380182 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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