RNA id: TCONS_00006128


Basic Information

Item Value
RNA id TCONS_00006128
length 1985
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_003048
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42470616 ~ 42473939 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATttgtcatatattatatatactttgaGTCTTTTGTCAGTTTTAGTGATCATTTTCATGCAATAATGGAGAAAATGATACAAATATGCATTGTAATTCATGTTGTATGAAGGTAAATGTACATTGTTTTATGCTAAATAATCATCTTTAGTGATACACGACCCTACTATCACACTTATAACTTAGATATCTGACATATATATACGTTCATAATTTAGCACTATTTgtcatattttatgtataatttagATGTTTTATCAGTTTTAGTGGTTGTTTTCAAGCAATAACAGTGAAAATCATAGAAATAATGCATCATAATTCATGTCGGATGAAGGATAATGTTTGTAATGTACATCGTTTGATGCTAAATAATCATCTTTAGAGTGATACAAGACCCCACTCTCACACTTATAATGCAGATACCTGACAAATAAGTTCTCAATTTAACACCATttgtcatatattatatatactttgaGTCTTTTGTCAGTTTTAGTGATCATTTTCATGCAATAATGGAGAAAATTATACAAATATGCATTGTAATTCATGTCGTGTGAAGGTAAATGTACATTGTTTTATGCTAAATAATCATCTTTAGTGATACACGACCCTACTATCACACTTATAACTTAGATATCTGACATATATACGTTCATAATTTAACACTATTTGTCATATCTTATGTATAATTTAGGTGTTTTATCAGTTTTAGTGGTTGTTTTCAAGCAATAACAGtgaaaattatacaaataatgcATCATAATTCATGTTGTATGAAGTATCATGTATATAATATGCATCATTTTATGATAAATAATCGTCTTTAGAGGGATACAAGACTCCACTTTTCCACTTATAATGCAGATACCTGACATATAGATTCATAATATATCAGGTTTAGTGGTTGTGCAATAACAGTGAGATGCAATAAGATTAAAATGGTACAAATAATGCATTATAATTCATGCTGtattattataatgttgtgtTTCTGACAATTTGAAGTTGAAATAGTAAGGGGAAGCTGTCTTAATCATCTCtgagaatgtttttatttactgtaaaaattactgCTGAATTACTACTGTATATTCtctataaaacaatgaaaaaaaatcagcattttattatgatttatgcaGAGTTATGATGCTGAAAACTTCTGTAGAAGgggctaaaaatgttttttttttctcttcataaaGGGGGCCTTGCATGCAGAAtaaagtttgggaaccactgcattaaacaacaaccacaacaacacaTAAACAGAATGAAGACTTTGGTGAGGGCACTGACTCCCTGCTACAGTCATTTTAACAGAGAACATTTACTTTCAATATATCAACAACTCGTGAGCTCTAAAACAATGCAGCTTCATAAATCATTCCTGTCATAACAGGTCATCGCTGGAACAATcgcattaaaaattaaatatacatcCGGTAATCAGAGACAGCACTGACTTGCAATCCTTAAAAGGGTAGTTCACGCGAAAATGAATATTTACCCattatttactctctctctctctctatctctctctcttaagtggtttgactttctttcttctgtttaacacaaaagaagatattttgaagaatgttggaaatgctATCTAAACGAGTTTtacttttctgttaaacacaaaagaagatattttgaagaatgttcagaaGAATGTCAGATCTCATGAAGGTTTGTAACAAATAAAGgatcttctgttaaacagaaaagaagatattttaaagaatggtggaaatgtgtaaccattgacttccatagtaggaaaaacaaatactactctATAAAATGCTGTGATATTCCAACCCAATTCTGGGTGTAATAGGAATAGTtgctttgtttctaaatgaataggaccaaatttaacccaatgtttgggttagtTCATATGTTACCCAATTTGGGTCAAAAtaacattagcatttttttttctggaagtaaatggttacaacctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005784 lncRNA downstream 115512 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00005583 lncRNA downstream 267784 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005783 lncRNA downstream 484253 41983136 ~ 41986363 (-) False XLOC_003040
TCONS_00005782 lncRNA downstream 484253 41983136 ~ 41986363 (-) True XLOC_003040
TCONS_00005573 lncRNA downstream 484290 41983136 ~ 41986326 (-) False XLOC_003040
TCONS_00005591 lncRNA upstream 325176 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 345822 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA upstream 346017 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006131 lncRNA upstream 346017 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006132 lncRNA upstream 979232 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00005582 mRNA downstream 172727 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005581 mRNA downstream 233312 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005580 mRNA downstream 323298 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005578 mRNA downstream 339208 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005577 mRNA downstream 362479 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005584 mRNA upstream 26956 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005585 mRNA upstream 203952 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005586 mRNA upstream 266923 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005587 mRNA upstream 269559 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005588 mRNA upstream 270757 42744696 ~ 42751641 (-) True XLOC_003051
TCONS_00005579 other downstream 339208 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 490952 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1567379 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1729169 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1932569 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 437994 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 518907 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1062021 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1244821 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1261347 43735286 ~ 43759479 (-) True XLOC_003066