RNA id: TCONS_00005584


Basic Information

Item Value
RNA id TCONS_00005584
length 1520
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_003049
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42500895 ~ 42519773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATTTATTTTGACACGCGGAAGTTGCCCATCCGGAAGTTGTCCTTCATAAGGTTGTTGTTCTGTCCTCGAAGAAATTGAAACTGTCAAATCAGCCAGATATCTGACATAAACGCCCAGCAGAAGCGATTAGATACACGTAACATCTTCAGgtgTGATCTCTGAGGCTGCTGTGGCTCACTCATGCTGGATTTAACCTGACTCATCATGGCCTGTGTTGACGAACCTCCAGAGAAGCACTGCTGGGTGTGTTTTGCCACAGAGAAAGAGGACCGCGCTGCTGAATGGGTCAGTCCCTGCCGCTGTAAGGGCTGCACAAAGTGGATCCATCAGTCGTGTTTACAGCGATGGCTGGATGAGAAGCAGAAGGGAAACAGCGGAGGAGCCGTCAGCTGCCCACAATGTGGCACCGAATACCGCATCGTTTTCCCCAAAATGGGTCCTGTGGTGTACTTCCTCCAGCAGGTGGACCGGGCTCTGTCCAGAGCGAGTCCATTTGCTGCGGCTGGAGTGGTCGTGGGCACCGTCTACTGGTCCGCTGTGACTTACGGGGCCGTCACGGTTATGCAGGTGGTGGGGCATAAGAAGGGTCTGGATGTGATGGAGCGAGCGGATCCTCTGTTTCTGCTCATGGGTTTACCCACCATCCCTGTCATGCTGGTGCTGGGAAAAATGATCCGCTGGGAGGATTATGTGGTGCGGCTCTGGCAAAGACACTCCGCCAAACTGCAGATCTTCAGCGGCCTGGTGCCGGGTATGGGTCGCGCTCTTCCCCGTGTCCCAGTAGAAGGCAGTTATGGAGGAGATCATCTCTCTGTGTCTCGTACCCTGTGCGGTGCCCTCATCTTCCCCTCCATCGCCAACCTGGTGGGCCGTTTGCTGTTTCGCAGAGTCACGTCGAACCTGCAGCGCACAATCCTGGGTGGCATCGCATTTGTGGTGATGAAAGGAGTGCTGAAGGTGTATTTTAAGCAGCAGCAGTATCTCATCCAGGCTAACAGACACATCCTGAACTACCCGGAGCCCGAGGGACAAGCAGACGGAGCGACTGAAGACGAGGACAGCAGCAACGaatgaaacaaacacacattcgAGGACGGCAAACCAATGCACTGTAGTATAGGATTCGCCAAGACTCAAAGAGctcatttttttcagcttcacACGCACTCTGAATCAGCACAAACACATGCTCGCTGTGTGTTATTAAAACGCAAAGATGGCCCGAGTTCTGTTATCATTGAGAAGAAGCAGACGTCGGGGTGTTAAAGTGCCTGTAAATGCAAAATTGACCAGTAGATGGCGCCAAATGCAAAAGCTGGTAAATGCACTGCACACTGATGTCTCTGATGGAAAATAGACGTTGACATTTAGGATGCAAATTGTACCAGCTGAATCATGTTCAGATTGTGAGAATGACGTGATTGATTCTGTTTGAAAGGTAACACGCACTGGCTCTTTAAATATAGATTAAATAAAGGATAATAAACACAGAAATGTTGACTTTTTGTTGCATTTAA

Function

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0090140 regulation of mitochondrial fission biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4792 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of cell aging; protein autoubiquitination; and regulation of mitochondrial fission. Predicted to be located in endoplasmic reticulum and mitochondrial outer membrane.

Ensembl:

ensembl_id ENSDART00000039187

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006128 lncRNA downstream 26956 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006127 lncRNA downstream 27253 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00005784 lncRNA downstream 145791 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00005583 lncRNA downstream 298063 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005780 lncRNA downstream 514300 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005591 lncRNA upstream 279342 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 299988 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA upstream 300183 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006131 lncRNA upstream 300183 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006132 lncRNA upstream 933398 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00005582 mRNA downstream 203006 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005581 mRNA downstream 263591 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005580 mRNA downstream 353577 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005578 mRNA downstream 369487 42111288 ~ 42131408 (-) False XLOC_003044
TCONS_00005577 mRNA downstream 392758 42089267 ~ 42108137 (-) True XLOC_003043
TCONS_00005585 mRNA upstream 158118 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005586 mRNA upstream 221089 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005587 mRNA upstream 223725 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005588 mRNA upstream 224923 42744696 ~ 42751641 (-) True XLOC_003051
TCONS_00005590 mRNA upstream 242681 42762454 ~ 42776344 (-) False XLOC_003052
TCONS_00005579 other downstream 369487 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 521231 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1597658 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1759448 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1962848 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 392160 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 473073 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1016187 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 1198987 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 1215513 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00873090_00877118.mRNA True 1688 mRNA 0.45 6 CI01000158 873032 ~ 877875 (-)