RNA id: TCONS_00005586


Basic Information

Item Value
RNA id TCONS_00005586
length 5267
RNA type mRNA
GC content 0.33
exon number 5
gene id XLOC_003051
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42740862 ~ 42759918 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAGTTTAATCCTCAAGGATGGCTTCTCGTAAGAAGGTGCTGCTGAAGGTGATCATTCTGGGGGATTCTGGTGTTGGGAAAACCTCTCTGATGAACCAGTATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGACTTTCTTACCAAGGAGGTGATGGTGGACGACAGACTGGTGACGATGCAGATCTGGGATACGGCAGGACAGGAGCGTTTCCAGTCTCTCGGGGTGGCGTTTTACCGTGGTGCTGACTGCTGTGTTCTGGTGTACGATGTGACCGCGCCTAACACCTTCAAGACTCTGGACAGCTGGAGGGACGAGTTCCTGATTCAGGCCAGTCCTCGAGACCCGGAGAACTTCCCCTTCGTGGTGCTCGGAAACAAGATCGACTTGGAGAACAGACAGGTGACGACGAAACGAGCCCAGGCGTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAAACCAGCGCAAAAGAGGCCATCAATGTGGACCAAGCTTTCCAAACCATCGCCCGCAACGCCCTCAAACAGGAGTCTGAGGTGGAGACGTACGATTTCCCTGACCAGATCAAACTGCGAGACGACAGACCTGTGTCCTCCGGTGATGGCTGCAGCTGCTgagacactgacacacacacgcacacacacatccagcATCCAGAAGAAAACACTCTTTTCCAAAACTTGTATGTAAAGAACTGTTAGCGGTTTCAAGAAACTCCCTGCCACAGCATCAGTTTTAATAGAACTACCTTTATGAATATTATTTCTACGAGAAAGAGATAGCTATTCTATTATTTACAAGTGATTATGTTTTTGCTTCATTCATGCACATTATATAGTGTCTCCTGCTTATGTCTGTCCGTGCCTTTTACTTCgtattttcttttatgttttaggATGTAAATGCAGTCACACTTCCTTGTAATTCCTTTTATTTGCCAAATCCCTTCACATGTTGAACTGTGGACGCTTGTTTCAACAGGGAGACTTTAAAAAAAGGTATGACTTTTTTTGTCTTGCTTGACTTTGATCTCAGAATTCTGAGGTTAAGTTTCAAATTTAAAAGTTTTGTACGATTTTTGAGAATGCCAGACTTGCAAAACAGTCAATAAACTGATATAACTGCaggaaaaaatgtaatgtttaggaCAAACTCACAATTAAGAAAAATCTGAATTTGAGGTTACATTTCTAGTGAAGATCCTGCAGTTTTTTCCCTATAATTCCTCTAAATATTACATGAAATTTGCATTTTGTGAGGGGAAAAAGCAGCAGTTACCAGCACAAAAAAGGTAAAAACTGCAAGATATAAAGCAGATCACAATGCTAAACAGCCTATAAACCTGCAAAATACACTACAGTTGAAGTTTTATAGCGCTGCAGacaaactcagaattgtgagatatcaACAAAATTActgataattttaataaaatctgCTAAAATGCACAATATTATTCCTTACAAACTTGCAatagaaatgaaggaaaaactgtTTCTTATCAGAAATGTACTTTAAAATGGTATTTTCATGTCACAAAAATGGCCAAGATATAAATGAACtgcaaatataaacaaaaaactgAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTTACAAAGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGCTTATAGAGCTGCAGacaaactcagaattgtgagatatcaacaaaaaataatagttattttaataatctgCTAAATTGCAAGttacatcatatttttttcttcataattCCCCACACAAATTATAAACTTGCaataaaaatgaaggaaaaactgtTTCCAATGcagaaaaattactttaaaatgatattttgataaatgataaaatgataaaaattgcCAAAATATAAAAGAACTGCAAATGTGAAGTAAAAACCAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGCTTATAGAGCTGCAGacaaactcagaattgtgagaaatcaACAAATATAATAGTAATTTAACAATCTGCTAATTGGCAAGTTACATCCTATTTTTCCCTCATAATTTCTCACAAAACTTACAAActtgcaataaaaataaagaaaaagctgTTTCTGATGCAGGAAAATTACTTTAATATAAAAGCACtgcaaatataaagtaaaaaccAAGCAAAAATGTGAATTTGAAGTCACATTTCATGTTAAGATCCTGCAGTTCTTCCCTAACATTtctctaaatatttaattaaacttgcctttctgagaaaaaaatctgCCGTTTTCAAGTCTCAAAAATGGCCAAGATATAAATGAACTGCAAATATAAACTAAAAACCAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTGAAGTTTTATATCGCTGCAGacaaactcagaattgtgagatatcaacaaaaaataatagttattttaataatctgCTAAATTGCAAGttacatcatatttttttcttcataattCCCCACACAAATTATAAACTTGCaataaaaatgaaggaaaaacagTTTCCAATGCAGAACAATtactttaaaatgctattttgataaatgattaaatgataaaaattgtcaaaatatAAAAGACCTGCAAATGTAAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGTTAAGATCCTGCAGTTTTTCTTTATAATTcctctaaatatttaattaaacttgcataactgagaaaaaaaatctgcagttttCAAGTCTCAAAAATGGCAAGATATAAAGCAGCTCACAATGCAAAACAGCCTATACACTTGCAAAATTACACTAAAGTTGAAGTTTTATAGCGCTGCAGACAAACTCAGAATTGTTCGAAatcaacaattataataattatctGCTAATTTGCATGTTGCATAATACTTTCCCCTTATCATTCCTCACAAAACTTACAAACTTGCAATAGAAATGAAAGGAAAAAACTGTTTCTGATGCAGAAATCtactttaaaatgatattttcatGTCACTAAAATGGCCAAAATataaaagaactgcaaatataaactaaatataaccaaattcagattttttttaaaaagttaagatCCTGCAGTTTTTCTTTATAATTCctctaaatattaaattaaacttgcATTTccgaagaaaaaaaatctgcagttttCAAGTCTCAAACATTTCAAGATATAAAGCCGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTGAAGTGTTATAGCGCTGCAGacaaactcagaattgtgagaaatcaacaaaaataatattgacTTAAAAATCTGCTAATTTGCAAGTTACTTTTTCCTCACAAACTTGCAataaaaaatgaaggaaaaactgcTTCTGATGCAGGACAATGACTTTTCAAAAATGGCCAAAATATAACCTAAAAACCaagaaaaatctaaatttgaAGTTACATTTCAAGTTAAGATCCTGCAGTTTTTCCCTAAAATTCctctaaatattaaattaaacttgcATTTGTGAGGGGTGAAAAAACAGCAGCTTTCAAGTCTCAAAAATTACAAGATATTAAGCAGATCCCAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTCAGGCTTTATAGCGCTGCAGGCAAACTCAGATTTGTGagaaatcaacaataataataataataataataataataataaaatgttaaattgcaAGTTGCATTATATTTTCCCCTCATAATTTCACACAAACCTTACAAACTTGCAATAGAAATTATGAAAAAACTGTTTCCAATGCAGAAAAATGActttgaaattatatttttaagtcaCAAAAATAGCCAAAACAAACTCCGAATTGTGAGATATcaacaaaagtaataataataattttaaaaaatctgttaaattgcAAGATACATAATATTTTTCACTTATAATCACTTAGAAAACTTGCAATATAAATGAAGCAAACGCTGTTTCTGATGCaggaaaatgactttaaaattatattttcatgtcacaaaatataaaagaactgcaaatatAATCTGAAAACCAAgcaaaaatctgaattgtgatattaaaaaagtcaaaatgacCTTTTTTTATTGAATCTCACAGCAGAAACAAGCTTCCACGTTAACCTTAATCAATTATTTAACTataaaactacacacacacacacacacacacacacacacagtacaagcAGTCCACATGATCAAAATCTACAGCGTAATTGAAGAGTTTAGAATCTCCAGCCAGAATAAGTGAGCGATTGTGCCTGagaacgaacacacacacacacacacacacacactccagcgcAGAGGGCCGTGTGGCTGTCAAATGAAGGTTTTGGGGGACATGAAATATCCAGTGCAATCATTTTAACCATGCAGCAGGTTTCCTTGGAAGCGTCTCCCGGGTTTTAATGTATGAATGTAACATTACTGATTCATTTACATCTCTACAGCTTATGTTTCTACATGCGCTTAGTTGATGTTTCTAACCAAATAATGATGCAGTTTATGGATATGATCAAATGTGAAGGAGAAAAACAAACGGAGAGCGAGTCCTGGCaacctttgatttatttttaacatccTTATTTCCATCCTCCAGTATTGTAGATGATTTAGATCGGAGAATCATAGTGACGTCTGCCAATAGAAACCAATAAACACATCTGTCCCTCTTTTATAAAACAATGACCTTTCCTAGAACGCTGTTCGATCATCTCTCGGTATTGTTTCCTCAACAATGCtcataaataaatctttattcaCATGGCAACGCTGTGGATCTTGTTTGTTTTAGATCTGaacacaacacatttttttgaaaGTAGTCTAATTTTACAGCTCCCCTAGAGATAAACAGTGGagttttactttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcagatgaTTTTCGGGTCTGGcggaaacacttttagcttagcttagcataaatcattgaatcggattagaccattagcatctcactaaaAAATAGTCTGATTTTACTGTCCCTCTGGGATTAAACTGctgatttttaccattttttaacacattcagTT

Function

GO:

id name namespace
GO:0090385 phagosome-lysosome fusion biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle.

Ensembl:

ensembl_id ENSDART00000182734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006128 lncRNA downstream 266923 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006127 lncRNA downstream 267220 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00005784 lncRNA downstream 385758 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00005583 lncRNA downstream 538030 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005782 lncRNA downstream 754499 41983136 ~ 41986363 (-) True XLOC_003040
TCONS_00005591 lncRNA upstream 47474 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 68120 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA upstream 68315 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006131 lncRNA upstream 68315 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006132 lncRNA upstream 701530 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00005585 mRNA downstream 55350 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005584 mRNA downstream 221089 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005582 mRNA downstream 442973 42195735 ~ 42297889 (-) False XLOC_003046
TCONS_00005581 mRNA downstream 503558 42195732 ~ 42237304 (-) False XLOC_003046
TCONS_00005580 mRNA downstream 593544 42134256 ~ 42147318 (-) True XLOC_003045
TCONS_00005590 mRNA upstream 10813 42762454 ~ 42776344 (-) False XLOC_003052
TCONS_00005589 mRNA upstream 10813 42762454 ~ 42776344 (-) True XLOC_003052
TCONS_00005593 mRNA upstream 121522 42873163 ~ 42882215 (-) False XLOC_003054
TCONS_00005592 mRNA upstream 121522 42873163 ~ 42882215 (-) True XLOC_003054
TCONS_00005594 mRNA upstream 135563 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005579 other downstream 609454 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 761198 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1837625 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1999415 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 2202815 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 160292 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 241205 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 784319 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 967119 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 983645 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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