RNA id: TCONS_00005589


Basic Information

Item Value
RNA id TCONS_00005589
length 1609
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_003052
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42762454 ~ 42776344 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAAAACTGTCGCAAAACACCtctgaatgacattttaaaggCCCATagcatagatatatatacaccAGTAAGGCTAAAACTAAAAGGGCTGTATTAGTTCATATTTCACTTCAGTAAAAGTGTCAACCAAATACACCTCCAGGCCTTTATTGGGAAAGTTCAGACTTTATAACtctaaattctgactttatttatttatttatttatttatttatttatttatttatttatttatttattttggcggGAAGGGGCTTCTCCGTGGTACCACTAATCTCCAGACCAGCAGAGGCGCACATGCGCAGTTCAACATCCCGAATGATCATCCCTAACATAGAAGAAGAAACCAGCGACAATAACAACAACATCGGGCAGATGTTGCCTAATATGAGCGATCAGACTTCAAAAACAGTATAAACTCATTTTTCGTTTACTTACTGATCTTTACCGGGGACTTTTCGCTATCTTATGGAGGATCAAATCTAGAGAATAAACTGCAGAGAAGTCTTCTGTGAGCTGTTCTCGGTCATCATGGCCCAGCAGAGAGGAGTCAACAGCCTGCAGTTCAACCAGGACCAGAGTTGTTTCTGCTGTGCCATGGAGACGGGCGTTCGCATTTATAACGTGGAGCCTTTAATGGAGAAAGGGCATTTAGatCATGAGCAGGTTGGCAGCATCGCTCTGTGTTCAATGCTTCATCGCTCAAACCTGCTGGCTGTGGTCGGCGGCGGCGTCAACCCCAAATTCTCTGAGATTTCAGTATTGATATGGGACGATGCTCGAGAAGTTCGAGACCCGAAGGATAAACTTGTTCTTGAGTTCACGTTCACTAAACCAGTGCTGGCAGTGCGCATGAGACACGACAAAATCATCATCATCCTGAAGAACCGGATCTACGTGTACAGCTTCCCGGATAACCCTGTGAAGCTGTTTGAGTTTGACACTCGTGATAATCCTAAAGGTTTGTGTGATTTGTGTCCCAGTCTGGAAAAACAGCTGCTGGTGTTCCCCGGACACAAATGCGGCAGTCTGCAGTTAGTGGATCTCTCCAACACCAAACCGGGCACTTCTTCGGCCCCGTTCACCATTAACGCGCACCAGAGTGAAATCGCATGTCTGGAGCTGAATCAGCCGGGCAGTGTGGTGGCATCAGCCTCCAGAAAGGGAACACTGATCAGGCTGTTCGACACCACCACACGGGACAAACTGGTGGAGCTGCGAAGAGGAACTGATCCTGCCACACTCTACTGTATTAATTTCAGCCACGACTCCTCTTTTCTGTGCGCATCGAGTGACAAGGGAACTGTGCACATATTTGCCCTGAAAGACACCAAACTGAACCGCCGCTCAGCTTTGGCTCGTGTGGGTAAGGTCGGTCCAGTCATCGGTCAGTATGTGGACAGTCAGTGGTCTCTGGCCAACTTCACAGTTCCTGCAGAGTGCGCGTGTATCTGCGCCTTCGGGAAGAACACCTCCAAaaacgtcaactctgttattgccATATGTGTTGACGGGACGTTCCACAAATACGTTTTCACCCCGGACGGAAACTGCAACCGTGAGGCTTTTGACGTTTATCTGGACATCTGTGATGACGATGACTTCTGA

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0034497 protein localization to phagophore assembly site biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0044804 autophagy of nucleus biological_process
GO:0006497 protein lipidation biological_process
GO:0005829 cytosol cellular_component
GO:0000407 phagophore assembly site cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:1901981 phosphatidylinositol phosphate binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-990 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation 5. Orthologous to human WDR45 (WD repeat domain 45).

Ensembl:

ensembl_id ENSDART00000130229

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006128 lncRNA downstream 288515 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006127 lncRNA downstream 288812 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00005784 lncRNA downstream 407350 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00005583 lncRNA downstream 559622 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005782 lncRNA downstream 776091 41983136 ~ 41986363 (-) True XLOC_003040
TCONS_00005591 lncRNA upstream 22771 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006129 lncRNA upstream 43417 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA upstream 43612 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006131 lncRNA upstream 43612 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006132 lncRNA upstream 676827 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00005587 mRNA downstream 2536 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005586 mRNA downstream 10813 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005588 mRNA downstream 10813 42744696 ~ 42751641 (-) True XLOC_003051
TCONS_00005585 mRNA downstream 76942 42677891 ~ 42685512 (-) True XLOC_003050
TCONS_00005584 mRNA downstream 242681 42500895 ~ 42519773 (-) True XLOC_003049
TCONS_00005593 mRNA upstream 96819 42873163 ~ 42882215 (-) False XLOC_003054
TCONS_00005592 mRNA upstream 96819 42873163 ~ 42882215 (-) True XLOC_003054
TCONS_00005594 mRNA upstream 110860 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005595 mRNA upstream 126747 42903091 ~ 42923385 (-) True XLOC_003056
TCONS_00005597 mRNA upstream 154009 42930353 ~ 43029001 (-) False XLOC_003058
TCONS_00005579 other downstream 631046 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 782790 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1859217 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 2021007 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 2224407 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 135589 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 216502 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 759616 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 942416 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 958942 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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