RNA id: TCONS_00006131


Basic Information

Item Value
RNA id TCONS_00006131
length 1948
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_003053
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42799115 ~ 42870149 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttcggacgcaTCATTCTTACATAACACGTAAAAATGCCGCTGAAGTGACTTTTATGGCAGGAGATGATGTTCATGTGTTTACTTCTTCATATATCAAGATGACGGACTGGAAACACCACAAGCGAGAAAAACCACTTCAGGGAGACTAAAtaCATAGAAGCACCGCAGCGTCCGTCTCTGCCCACTTCACCAACCATTACTGTTAAACGCAGCAGATAATGTCCTGAGTAAAGCCGATGTCCTTCAGGGAAATAAACACGCTCATCGATGGAGGTCTAGAGAAACAGCCGGCGGCCTGAACATTTGTTCTGTGGCATCTTCATTATTTGCAGGCCATTATGATGCGTCACGCCTCGTCTCCTGTAGGCTTCACTTTCAACAGCCAAGGGTCTTTTGAAGGAGAAGAGCCGGAGAGGGTTCAATCGATCCGCTCCTGCGAGAACATGTGGAAATGGGCTCCTCTTTTATTTAGCAGAGGCCTGTCAGTCATCAAAGACACGGCAGGATCATACGCCAATGTAAATGAAGATCAGGAGTGCTGGGAAGGTGAACTTGTTGGTCCGACTTCTCCATCATTAGTTCCGGTTTtatgtaggaaaaaaaaaacgtggaGCTGAAGAAATAATGGAAATGATATGCACGAGCTTGAAGGCCATGGCAATCGACTTTCACATTCAACATTCATCTTAAGAGACGCTCAAAAGTTCTCATGGTCGCGATATGGAAtagaaaatgtctttttttctttcttttttttttacgtgaTAAAAGAGCCGTGTGCTTGTCTCACCTTGACAAGGCCATTGTGTGAGAAGAGAAAGCACAGGAATCACAATATtagatcattattattttttgtcaagCATGAGGAGTCAAGAGTGGGAAAATTACAATTCAGGTTTAACCAAACTGTAATAAGTGTAACTAAACCTAAATTTAATGACCTAAATCTTAACCTCAGTAATAACTGAACCAAAACTACAGTATTAAGTAAATAATGTTTCTGTGTCcaaaattttattaataacttcAACAAAGCCAAAATCTCAGCATTGACTTAACCAAAACTTTAGTATTACCCAAACCAGAACTTCAGTGTTACATAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTACCTAAACCTAAACATCATTATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAGCTTAACCAAAACTTTAGTATTAATTAAACCTAAACATCATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGGTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTAACTAAACCTAAACATCAGTATTGACTAACCAAAACTTTAGTATTAACTAAACCAGAACTTGAGAGTTACCTAAAACAAAACTTTAGTATTAACTAAACCTAAACTTCAGTGTTAACTAAACCAAAACCTCAGCATTAACTAAACCAAAACTtcagtttaaactaaactaatgtTTCAGTATCATCTATGCCAGTATTTCTGTGTTAACTAAAccaaaacattattattagcaAAACCAAAACTTCAGCTTTCCATCTGCTTTCCATGCCCTCGCCGGGCATTACCAGATGTTGTCGCTGGTAAGGCAACGCCTGCAGCAGGCGGTGGATCACAAGCCTTTCGACTACCTGGGCAACTTATAGATGATCTACAAGCAGCCAAAGGCAGGCCAGGTCAATTAGAGCTTTGGCCTGCTCTTTGGCTGAGGCGCACTCATCCAGGGGCCACTGCCGTGAGCGGCGCAGCGCACACTTTCCGTTTCGGCTGGGGGAAGCGCTCTCCGTGAGCCGGAGTTGATGACGACCAGTTCCTCGAGCTGACGGTGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006128 lncRNA downstream 346017 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006127 lncRNA downstream 346314 42470616 ~ 42473642 (-) False XLOC_003048
TCONS_00005784 lncRNA downstream 464852 42313639 ~ 42355104 (-) True XLOC_003047
TCONS_00005583 lncRNA downstream 617124 42199733 ~ 42202832 (-) True XLOC_003046
TCONS_00005782 lncRNA downstream 833593 41983136 ~ 41986363 (-) True XLOC_003040
TCONS_00006132 lncRNA upstream 583208 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006133 lncRNA upstream 614664 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006134 lncRNA upstream 629566 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005608 lncRNA upstream 629566 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00005635 lncRNA upstream 1372273 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005590 mRNA downstream 43612 42762454 ~ 42776344 (-) False XLOC_003052
TCONS_00005589 mRNA downstream 43612 42762454 ~ 42776344 (-) True XLOC_003052
TCONS_00005587 mRNA downstream 60038 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005586 mRNA downstream 68315 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005593 mRNA upstream 3200 42873163 ~ 42882215 (-) False XLOC_003054
TCONS_00005592 mRNA upstream 3200 42873163 ~ 42882215 (-) True XLOC_003054
TCONS_00005594 mRNA upstream 17241 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005595 mRNA upstream 33128 42903091 ~ 42923385 (-) True XLOC_003056
TCONS_00005597 mRNA upstream 60390 42930353 ~ 43029001 (-) False XLOC_003058
TCONS_00005579 other downstream 688548 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 840292 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1916719 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 2078509 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 2281909 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 41970 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 122883 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 665997 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 848797 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 865323 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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