RNA id: TCONS_00005592


Basic Information

Item Value
RNA id TCONS_00005592
length 5361
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_003054
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42873163 ~ 42882215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGACGCGCTCAGACTGGAGTCCGCTCAGTCCGCTGACTGATGCTGGAGTCCAAATCTGGGGAATGAGAGAAATGAACGGACGATGGTTTTACCCCGTTTACATTAGAGAAAGTTGATCTGAAATGAGAACTCCTTGAAAAGAAAACGGAGCTTTTCCTCCTCAAGTTTTGGATgggtttattaaaaatgatttgtcAGTAGTCTATAATGTTTCTTATTTGAGGAACGGATTGGATGGTGCGCATTTTAACAACTTCACCTCATCGGACACGCATAAACACACGAAACTACCATCTCTGAATTTAGTTTTTCATCCGAATGTTGCTCCCTAGCTTTTATTATACATGAAATTGTGAGTTGTTTTGGCGCGCTGGTGTTCGCGCGCATTTCCCCGCGCGCTTTTTTTTCCCTCAGCTTCATTTTTTGGACAAGAATTGGATCAAAACTTATAAACGAGGATCTCTGTGCCCCTCGAGTGACTTATAGTGGTCAAAAGCTGGTCATCTTATGCTGTGGTAAGTTCAagcttcatttattattattaattattcgtATTACAAACGACCGTTTGTTGTAGTTGGCTAGCTAGTTAAACGGCCGTTTTACTTAACAATATTACCTTCACACTGTGTGAAAGgacatatgtttatttatttagttatttatcgACTGCATGATTAGttttaatacaaatacaaaatattaatttgtaatttttcttCTTCTCGAGGTTTGCTAAAGGAGGATGTCAGTTTTTCCTTCTAAAACTCGTCGTAATCAACTCACTTTTCACAGTTTTCTAATCGACCAAATGTCTTTGCAAGGATTACGCTAGGAAATACGCATACATCAAGGACTTTACACCTGGAACTTAAATATGAATTATTCCAGTTGCAATTCCAGCTCGTCCCGGTATTCCCCTGAAATAACCGCGGTGTTTGCCATCACAATGACTCTCATCATGCTCTTCACCATCTTCGGGAACATCATGGTGATCATCGCAGTCCTCACCTGCCGCTCTTTGCGAGGACCTCAAAATCTTTTCTTGGTGTCTCTGGCAGCGGCTGACATTTTGGTGGCCACTTTAGTCATCCCGTTCTCCCTGGCTAAAGAATTAATGGGTTGCTGGTACTTCGAGTCATTGTGGTGCGAGATCATCCTGGCATTAGATGTGCTTTTTTGCACATCCTCCATCATTCACCTGTGCGCCATCAGCCTGGACCGCTACCTGTCTATATCCCGACCTGTGCAGTATGGCACCCAGCGCACTCCTCGAAAAATTAAAGGCGCCATTGTTGTTGTATGGCTTATTTCTGCCATCATCTCCTTCCCGCCATTGGTCTCCATGGATAAACCCCAGCAAGCGAAGGGTGACCCGCGAACAACATGCGAACTCAATGAGGACAAATGGTATATTCTGTACTCCACCATTGGGTCATTCTTCGCCCCATGCCTCATCATGATCCTGGTTTACGTTCGCATCTATCAGATTGCCAAGAAACACACAAGATGTCCTCCAGGAGAGCCGAGGAAAGACAGTGCAGtggGACGGGAGCTTCAGAATGGCAAAGATGGAGGTGTTGACTCCGCAAACAATCCCAATATAGCTCCATCCAAATCTGAAGCCGTAAAACAGCCTCCGGTGATAACAGAAAGTGCTCAGAAGACGAAACGCTCAAGAAGATGCAAGGAAAATAAAGAGGAGAGCTCGAGCTCTGGATCAGACGTTGAGGTTGTTGGCGGACATGATGCCAATGGTACAAACTCCAATATGGCGCCGCTGGAAACCGTCAACAAGACTCCCGCACAATCCCAGTCATATCGAAACATCATCGCTACGTCAAAGGGCAGCCAACTAGCCAATGCTAAAGCAACAGGAACTCCGAACACCAGAAGGAAAGCCATGATCGTCCGTGAGAAGCGCTTTACATTCGTCCTCGCTGTGGTCATTGGGGTTTTCATCATCTGCTGGTTCCCGTTTTTCTTCTCCTACAGCTTGCAGGCCATTTGTCCAGACATGTGTAAAGTTCCAGAAGGACTTTTCACCTTCTTCTTCTGGATCGGCTACTGCAACAGCGCCCTGAACCCGCTCATCTACACTATCTTCAACAGAGACTTCAGGAAAGCCTTCAAGAAGATTCTGTGTAAGAGGTGCAAGGACTGCTCCTTCTGAAAGCAGACATTGGCTGGATGttgttgttttacagtgttacaggtTTCATCTAAAAGTGAGGCTTGTGGAACTCTCCTGGTCATATTTCACCCTCACTCAGATATTTAGCTGTGCGACAGTCCTACTGTTGTAGCTTATACTTTTATTATCAATTACATTTATATCTATGAGCACTTTTTAATAAAATTGCTCCTTGAGctgtttgcagtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattagtgctgGGAAAAGATCAGTTGCGATGTTTATTATGTGTATGTGATGCACACGGtagcggcacagtggctcagtggttagcactgttgcctcacagcaagaaggtcgctggtttgagtctcggatgggccagttggcctttctgtgtggagtttgcatgttgttggtgtgggtttcctccgggtgctctagtttcccccacagtccaaaccatATACTGAAAAATGTGgacggctggaagagcattccgctgtgtataacatatgcttGAAATGTTGGCGGATTATTCTGCTCTGGTGACACATGATGTATAAGGCactaaggaaaattaatgaatttgtaTCATAAACATATAGATTTTATAtctaaacattaataaatgtaaaaaaaatatatgaatgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgcacagttgaagtcagaattattagcccccctttgaatttgtttcttttttaaatatttcccaaatgatgtttaacagagcaaggaaatgttcacagtatgtctgataatatttttttcttctggagaaaggaccgtttgttttatttcggctagaataaaagcagttttaattttttcaaacaccattttaaggtcaaaattattagcccctttaaaaaataaaataaatagataaaataaatcagttattagagatgagttattaaaactattatgtttagaaatgtgtcaaaaaaatcttctctcagtgaaactgaaattgggggaaaaataataaatgagggctaataattctggcttcaactgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatatatacaatacacaCAAAATTTTGgaagcttttatatatatatatatatatatatatatatatatatatatatatatatatacagttgaggtcagaattattagcccccctttgaatttcttttttttaaatatttcccatatgatgtttaacagaacaaagcaatgttcacagtatgtctgataatattttttttcttctggagaaagtcttatttgttttattttgcctagaataaaagcagtttttaatttttaaacaccattttaaggacaaaattatcagccccttaaggcaatttttttttcgatagtctacagaacaaaccatcgttatacaataacttgcctaattaccctaacctgcctagttgacctaattaacctagttaagactttaagctgtatagaagtgtcttgaaaaatatctagtcaaatattatttactgtcatcatgacaaagataaattaaatcagttattagagatgagttattaaaactattatgtttagaaatgtgttgaacaaatcttctttccgttGAACAAAAAacgtggaaaaaataaaaagggggtgaataatacagggggttagggttagtaattctgacttctacatgtgtttgtatgtgtatatgttaTGCGTGTGTATATATGCTCAGAACAGAATTGTTTGCATGTGTCAATATACTTTTAACATGTATGTTTgttatatatgcatgcatgcacaaaAAAGCATCTTTACTTTTTCCTCTGTATTTTTTCGTCTATACTTTTATAGGAATATTAAGTTGCTATAAGATTAAATCTGCACTTTTGTAATTCCAGCCTCTGTGGCAGAGCGGAAAGTCTAGAAACAGCCTAGATAATGTTTCtacaaattctgtcattattgcaTATAAATACTTGTGCATGCTCAGAGCTGTCTTTAAATACTTTCATTAATTAGTTTGCATGGCCAGATTTTTCTAAAAAAAGATCATTCAGTGTTTCTTATTTGTCCTTTTAATAGTCATATGAAAACGTTACAGTGCACAAAACCAGGACAGTTATGTTTAACGGAACGCACAGCACATTTTGTAAAAGTTTTGGGTGAAATATGACCTTGTTTTGATGATTTGAAATGCAATTCTTCAAGGAGTGAGATCCGCACAATGGCTTCTTCTGTATCTGGATGTTTAAGTAACCGCTGTTTGCTTTATTCTCTAGAACATTTGACTCTTCTTCCATCAGATCGGTTAAAAGAGCTTCAGCTCGCATTCCTTTCATTTTTGTGTTTCGTCAGCTGAGGTGCCACATCAGACATGAGGAACTCTCACAAGATCGTGCCGATGGAAACACTTCAGGATGTTGGTCGTGACCTTTCTAGTGTACTTCCAAAGACAACGCGGGTCTTTCTTAGAGACACCTCTGGCTGACAGAGATAAAAAATTCAGAGATGTCAGAGAGCGTCAGCTCTCTGGGAAAATACCAGATTAAAGCAAAttacaaacaaacgcacaaagcAAGATGGGTGGATTTCTGAAATCCACTTTTAACTTAAATTTTTCTTAATGTAAAGTCAATATTTAGCTATCAAAAAGCTTCTTTTATTAACTGAAATCATTAAGAGTTTGCtgttacaattatttattatttttaaaacattttcactgCTGTAATTAAACTTTAAATCAGCATTTTGAAATGATTTCCTGtcaaaattaaagcaaaataccttatattataataattgtaatttttgttttcatttattcaattcatttcatTATAGTGTGCTGTATTAATATGCCTGTGTCTTTCGCGACAAGTTTTTTTCTGATGCTTAGGTTTCTGTGTGTACATGGGATGATACTTGAGATGGTTTTTGTAGCGTGTTCAACAACAACCCAaacaatacatcactttaaactattacaaatgtcaaTAAAGGTCCCTTTTTCATaactttaaggttaaaagtttttGAAGGAAAGGTCAAAGTCTCATCCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180580

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005591 lncRNA downstream 3014 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 3200 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 3207 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 40099 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006128 lncRNA downstream 399224 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006132 lncRNA upstream 570956 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006133 lncRNA upstream 602412 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006134 lncRNA upstream 617314 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005608 lncRNA upstream 617314 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00005635 lncRNA upstream 1360021 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005590 mRNA downstream 96819 42762454 ~ 42776344 (-) False XLOC_003052
TCONS_00005589 mRNA downstream 96819 42762454 ~ 42776344 (-) True XLOC_003052
TCONS_00005587 mRNA downstream 113245 42743498 ~ 42759918 (-) False XLOC_003051
TCONS_00005586 mRNA downstream 121522 42740862 ~ 42751641 (-) False XLOC_003051
TCONS_00005594 mRNA upstream 4989 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005595 mRNA upstream 20876 42903091 ~ 42923385 (-) True XLOC_003056
TCONS_00005597 mRNA upstream 48138 42930353 ~ 43029001 (-) False XLOC_003058
TCONS_00005599 mRNA upstream 228573 43110788 ~ 43117607 (-) False XLOC_003059
TCONS_00005600 mRNA upstream 228573 43110788 ~ 43117644 (-) False XLOC_003059
TCONS_00005579 other downstream 741755 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 893499 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1969926 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 2131716 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 2335116 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005596 other upstream 29718 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 110631 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 653745 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 836545 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 853071 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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