RNA id: TCONS_00005595


Basic Information

Item Value
RNA id TCONS_00005595
length 4319
RNA type mRNA
GC content 0.39
exon number 15
gene id XLOC_003056
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42903091 ~ 42923385 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACCAGAACTGCCCACCGACGGACGGGCACCGGAAGAACAGGAGCGGGTTCGGCTCGGTGGAGGTGCAGATGTGCCAGTCCATCCTGCCCTGCCATGCCAACCATCAGGGCGAGCTGGGCGCCGGGCAGCTGCTCAAGTGGATGGACACCACCGCCTGTCTAGCAGCTGAAAGACATGCAGGAATGGCGTGTGTTACGGCTTCAATGGACGATATCCAGTTTGAAGAGACTGTCAGggttGGGCAGGTCATCAGTATCAAATCCAGAGTGAACAGGGCTTTCAACACCAGCATGGAGGTGGGCATCTATGTAACCGTACAGGAGGTGCTCAGCGGCGTGatgaagagagtgtgtgtggccTTTTCTACATTTGTTGCAAAGCCAACAGGAACACAAAAGGTGTCTCTGAAGCCGCTGGACGTTCAGGGCTCAGTAGAGGAAATGCTGGAACATTCTCTGGCTTCTGAAAGACGACGACTCCGTCTCTATAATGAAGAGGCCTTCAATAACCTCATGAAAGACTATTACAACCTTCAAGACAAAGGATTGTACAGAGGGAAACCTGTGACACCTGCAGTGTCGACTGAGCTCACACGGGTCGAGAGCATCGAGTTGGTGCTGCCGCCACACGCTAATCACCATGGAAACACGTTTGGAGGGCAGATCATGGCCTGGATGGAGAATGTAGCTACAGTAGCAGCCAGTCGTCTGTGTGGCTACTATCCTTCTCTCGGAGCTGTGGACATGTTTCGCTTCCGAGGGCCGTCATTTGTTGGTGACAGATTAGTGTTCAAAGCCATGGTCAATAACACCTTTCAGAACAGTGTGGAGGTGGGTGTGCGGGTGGAGGCGTATAACTGTGAGGAGTGGAATGAGGGAACTCCGCGACACATCAACAGCGCCTCCATGATGTACTACATCCCAGAGCGGGATGGTGAGAGACGCATGCTTCCTGACGTCACCTACACAACACTTGATGGAGAAAGACGCTTTATTGGTGCTATCGTAAGGAAGAGGATTCGCATGGCCAgAAAACATATTTTGTACTCAAGAGACGAGGGACCGGTTTCTGTGCCCTGGGACAGAAGTAATCagGTGTATTTGGGGTACAACAATGTGGCAGCTCTCACCGTGATAGCTGGACAACGGGACTGGGAGCCCAATAACATCACTGATAAGATGGGACTCTATGTGCACGAGGAGGCAGATAAGCTGTGTTTAAAAGTCGAGATGCAGGCCAAAACCACGGCTTTTCATGCTTTCTCCATGCTCGCCGACCTGCAGCTACGGCCACAGTGGGACAAAAACTACCTGAGCTGTGATGAGGTGGAGAAAGCAGACGAGGAGGAGACCATCTATCATGTTAAATGTGCTACAGTTAATGGAGGCAAATGTCGGGATTTTGTGTACCTGCTGTCTAAAAGGCAGCCCTGCAAAGATGGAGACCCGTATGTGGTAGCACTGCGGTCCGTCACGCTGGCAGCTGTCCCGCCTGAAGAGAACTGCATTCGGAGTGAAGCCAAATGTATAGGATTCCTCATTCAGGAAACCAGTGTTTCAACCTGCAAGGTGTCCTACTACAACCAGGTGACCTCTGGAATTCTGCCGTATGTGGAGGGAAACTTAGCTGGCTGGTCCAGATCTATGGAGGAAACGGCAATGTCCTGCATCACGTATCTGGAGAGAGATGTGCTGACCACACCATTCTAACACACAATAATATCATACCCTGCTGAAAAGGACATCAACAACTCATACAGTGTAAATAATTATGACAAATAAGTCAGGACTACATCCATATGAGGGTAAAACTAGTAGCATAAATATTTAAGGTTTAAAAGAGCCAGGACATTTTTCAATGTATTTCCTAAAAcgtttttcttctgaagaaagtcttatttcttttagttctgcataaataaaacaatttaaataaaaatgtaaacactaaTAGAGCTATATTATTAGCTacagtgtttatatttatgtaggctagaaaataataatttttgtaatattttaatcctttaattctttttcatttgtaaagatatttgcatattgctgtacatcctgtgtgtattaagcaatgtgtaagcgaggcgctcaactaacacgctctgcgctggactatagacctgatttgatctggtctattgaactgtctattttagttcctcaaaatagcaacacaccttaacacgcctccttttttagaccagaacgcacATATGAGcgtaaatgcatttgctatttaaacagcgtggcacaaaacgtcaaaatgatTCTTGcatcgagctgaaactagcaaacaacaaatgCGTCAcgtcttgcgccgggtgtatgatagggcctttatggtttacattttaaagcagcCAGGGAGGATTTTGGAGGAAATCACATACAGTACATGCTTGTCAAGTCATATATGctaaaaacaaatagttttgGCTGCATGGAGCAGTTTAATGTCACAATAgcaataaactataaataattaataaaaataaataaaaagatttgtcTGTCCATTCTGAAATGATGTTTTAATCGATAACGCTGATGAGCTAAAGGAAAACCAAAACAATTTCTAGCTTCCTTTCCTAATTTATAACCCCTAGAGCAGAGATGCTCAAActaagttggcccatggtaatctttgatttggcccgccatctcatctgagaagagagggagaatgatggtgATGGTTTAGAGACTGTCATTTCAAGTTTAatttaaccttttatttatttgttgtattgttAAGCAACAAAAAAAGCTGACAAATTTTTCAATCTAAATGCTGttcagtttaaaatgtacatactgtcacctgacagATAGAGACCAAGtgtgactagtgtattcagcattgaactccactgttatAAATGGTATTGTTcatgtttttaatgcaaaaaaatatataattaaaaagttATACAGCATTAGGTAATACGATTAAAAAGTAatgtttactatttattttttaatattaggaaattacccatggcaactttaatgtaaaatagtttggtgtGTTTATCTTCGGCTCACGGCTCTTAATGATATTTGGTTATTGGCCCTTTTGTTTGGACACCTTTAAAAGATCAGAAGATACAgctaaagacaaaattattaatcaataactattctttttcaaatataagtgtttaacagagcaaagacattttgcTCACAGAACTTcctatttatattatattcaggagaaagtcttttaATTTgactgtaatatatttatttttgaatgtaaaaactgccacagtcattattattagcccctttatgaaATAATTTTTGATATGTTGGAAAATGTTttatatctctgttaaacagcacttattggaaaaaaaaacaggagagctaatcattttgtcctcaACTGTACATCTAATAGCAGTTATATAAATTACAACCACAAAATCACACCTCTTGTATTGGGTAGAGTTGTACAAAATAAGTTGTATTGTTTCTATGCAAATTCCCTGAATACTTCAATagcataaaaatacatacaattctgACCAAATCATGTGTGATGTTCCAGTCTCAGATTCATCAGGGGGATGTTTATGTGTCTAAAAACAGAATCATTGGCAATGACTGTAGAAACCAAGTCTTAATTGTAGTATCAATTCAATTGTCCATTTCTAGGTTTCTGAATCAGAAAACCACAACTTTGGCTTTTTTGGGTTGAACTTTTTTGACAGGCACGTGCACGTCCTCATGGTCAGCGCTGATTCTGTTGGACAGCCGGCCCAGAGTGATGGAATTAGCTGAAAAACAAATATGTAATGCTTACATTTTTATACTTGCACATTTTATTATGCAAACAGATAAAATGTGACAATCAATGAACTATACGAGAAAACATTGCctgcatttaatttgtttatgccCAAACTAGAACTAAACAAATGTTAGATAACCACCCTCCTAACCACCATAAACACCAATTATTACCATCTGtaactgtttaaaaataaacaggaTAATCAATGAAACAAACATTATCAAGTATATGATCAAATAAGTGTAATAAAGATAATTAAATGCaggacttaaagggacagttcatccaaaaattaaaatgctaTCGTTTATTCATCTTTTGCTTGTtctaaacctttgagtttttttttattctgttgattacaaaagaagctattttaaaaaatgctggaaacatGTAACTTCCATAGTTTTTGTTGTTTCGATTAAGGAAGTCAGTggttccagctttctttaaaatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000076731

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005591 lncRNA downstream 32942 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 33128 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 33135 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 70027 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006128 lncRNA downstream 429152 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006132 lncRNA upstream 529786 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006133 lncRNA upstream 561242 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006134 lncRNA upstream 576144 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005608 lncRNA upstream 576144 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00005635 lncRNA upstream 1318851 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005594 mRNA downstream 4871 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005593 mRNA downstream 20876 42873163 ~ 42882215 (-) False XLOC_003054
TCONS_00005592 mRNA downstream 20876 42873163 ~ 42882215 (-) True XLOC_003054
TCONS_00005590 mRNA downstream 126747 42762454 ~ 42776344 (-) False XLOC_003052
TCONS_00005589 mRNA downstream 126747 42762454 ~ 42776344 (-) True XLOC_003052
TCONS_00005597 mRNA upstream 6968 42930353 ~ 43029001 (-) False XLOC_003058
TCONS_00005599 mRNA upstream 187403 43110788 ~ 43117607 (-) False XLOC_003059
TCONS_00005600 mRNA upstream 187403 43110788 ~ 43117644 (-) False XLOC_003059
TCONS_00005601 mRNA upstream 187719 43111104 ~ 43113731 (-) True XLOC_003059
TCONS_00005602 mRNA upstream 346533 43269918 ~ 43334999 (-) False XLOC_003060
TCONS_00005579 other downstream 771683 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 923427 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 1999854 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 2161644 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 2365044 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005598 other upstream 69461 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 612575 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 795375 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 811901 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 908497 43831882 ~ 43832668 (-) True XLOC_003068

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01116779_01131501.mRNA True 1961 mRNA 0.50 14 CI01000158 1116728 ~ 1131677 (-)