RNA id: TCONS_00005599


Basic Information

Item Value
RNA id TCONS_00005599
length 1072
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_003059
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43110788 ~ 43117644 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGACAGGGGATAGCAAGATGGTAAGcgcaaaagtgttattttggagTAGTTAAGAGATGCGTGTtctgCCATATTTAATTTCCAGAGTCTGTTGACGGTCATCTTACTGCTCATCTGCACATGCGCGTACATACGGTCCCTCACTCCCAGCCTGTTGGACAAGAACAAAACAGGATTCCTTGGAATATTCTGGAAGTGTGCAAGAATAGGCGAGCGCAAGAGCCCGTACGTAGCGTTTTGCTGCATCGTCATGGCCTTCACCATCTTATTCTCAGAGTAACGTCGCAGGATTTGAATAAGATGATTTCCAAAAACAGCTTCGAGACTCTCCAGCAGGGAACAAGATGTGTATTTAGGTGACATTCAGAAGAGTTAATGCATGTGAAAGAGCTCTCGATCTCCAGAGTAAGTGTTTCTCAGCCTCACGGAGCTGCTTGTACATACAGATTTTCAGTTTTTGGTCTCCACAATGAAGCTCCGGTTGTCTTTGACTCATGAACTcaatgctgttgttgttgttgttggagctGACATGTTTAACGCGGGACATCGAGGATGAATCTGGATATCATGCTATCATTGTTCACTTAAATCTGTTGACTCTTTTACATGTGCCGATGTTCgcattaaagatgaatttatTACTGAACGTTCATTTTTGTGTGTATTAGAGAATAAGATTGTTGATGTGACTGATACTGATTGCTGATTAATATGATTCTAATGTGAATACTGTTCGATTTCTGTATCATTAGTAAGTAAGATGAGATTAATGAAAATGATTTAATcagcagaatgtttttttttgttttgttttatttttacactcCTGTGGTttaaacttaaaggtgcagtatgtatgtTTGACACTCAggggttgaactaggtattgcattcctggatcaaaacaaacacaagcgcaggttgccagattgacgaccaaGGAGCGAGTCTGACAATCGAGCCTAAAGGCGGATTTAAACTGTAGGGAtggtttacagtttaacccaaagaatgactaGTCTGgtagccggagtcagagatttaaataaataaatcaagtttactgaa

Function

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0046907 intracellular transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-29 Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167A (transmembrane protein 167A).

Ensembl:

ensembl_id ENSDART00000148293

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005591 lncRNA downstream 240639 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 240825 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 240832 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 277724 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006128 lncRNA downstream 636849 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006132 lncRNA upstream 335564 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006133 lncRNA upstream 367020 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006134 lncRNA upstream 381922 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005608 lncRNA upstream 381922 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00005635 lncRNA upstream 1124629 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005597 mRNA downstream 81787 42930353 ~ 43029001 (-) False XLOC_003058
TCONS_00005595 mRNA downstream 187403 42903091 ~ 42923385 (-) True XLOC_003056
TCONS_00005594 mRNA downstream 212568 42887204 ~ 42898220 (-) True XLOC_003055
TCONS_00005593 mRNA downstream 228573 42873163 ~ 42882215 (-) False XLOC_003054
TCONS_00005592 mRNA downstream 228573 42873163 ~ 42882215 (-) True XLOC_003054
TCONS_00005602 mRNA upstream 152311 43269918 ~ 43334999 (-) False XLOC_003060
TCONS_00005603 mRNA upstream 152593 43270200 ~ 43294933 (-) False XLOC_003060
TCONS_00005604 mRNA upstream 165742 43283349 ~ 43334914 (-) True XLOC_003060
TCONS_00005605 mRNA upstream 238288 43355895 ~ 43392667 (-) False XLOC_003061
TCONS_00005606 mRNA upstream 238288 43355895 ~ 43404027 (-) False XLOC_003061
TCONS_00005598 other downstream 81982 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 198741 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 979380 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1131124 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 2207551 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005609 other upstream 418353 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 601153 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 617679 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 714275 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 890602 44008209 ~ 44017665 (-) False XLOC_003072