RNA id: TCONS_00005606


Basic Information

Item Value
RNA id TCONS_00005606
length 1546
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_003061
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43355895 ~ 43404027 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTCTCCATCTTCATCATCACTGCAGTGAAGctgaagcagcagcagcatcagCACCAGCGCGAGTCTCTCTGCATTTCATCCGCATCTCTGCTCCACACACCGCGGATTCAGGACTGCAGGACAAACCGCGGACACACGAGAGTTTCCCGCGATGCTGCCCGTGTTTTTGTTGCTGTTCGTCCGCACTGGCGCGTCCCTCCCGCATCCGACATCCGCGGGTGAAGTATGTGAACCAGTTCCCTGTGAGAACAGCGCTGACTGTCCCACAACACCAGCGGATGAAAATGGGTCCTCAGCGTCAGACTGGAAAGAACAATCTATAATTGGGCCCTGCCGGCCAAACCCGTGTCACAATGGAGGCCTGTGTGAACTTAATCAGACCGACCGCGGAGACGCTTTACTGGGATATTTGTGCAGGTGTCCGGCTGGATTCAACGGGGTTCACTGCCAACACAATGTAAACGAATGTGAGAAAAACCCCTGCAGAAATGGAGGAAGCTGCACAGACCTGCAAGCAAACTACACCTGTCTGTGTCCTGGAGAATACATGGGACAAAACTGTCAGTACAAATGTTCCGGGCCTTTAGGGATGGAAGGAGGAATCATCTCGAACCAGCAGATTACAGCTTCATCTACACACCGAGCTCTGTTCGGCCTGCAGAAATGGTTCCCGTACTTCGCCAGACTCAATAAGAAAGGCCTGGTCAATGCCTGGAGCGCGGCCGAGGGGGACCGATATCCTTGGATTCAGATTAATCTGCTGCGCAGGATGAGGGTCACCGCACTCATCACACAGGGCGCCAAGCGGATCGGGAGCCCCGAATATGTGAAGTCATTTAAAGTGGCGTACAGTGAGGACGGGAAGGCCTGGAGCTTATTTAAAGTCAAGGGCACGGATGAGGACATGATATTCACTGGAAACACCGACAACAGCTCTCCCTCTGTGAACTCCTTCAGTCCACCAATCGAGGCGCAGTATATCCGCGTTTACCCTCAAATCTGCCGGAAACACTGTACTCTGCGCATGGAGCTGCTGGGGTGTGAACTCACAGGATGTTCAGAGCCCATGGGGATGAAGACGGGACATATCCAGGACTATCAGCTCAGCTCGTCCAGTGTGTTTCAGACCCTCAGCATGGACATGTTCTCCTGGGACCCGTCCAAAGCCAGACTGGACAAACAGGGCAAGGTGAACGCATGGACATCCGCGCACAATGACCAGTCACAGTGGCTGCAGATAGATTTGCTGATTCCCACTAAAGTCACAGGAATCATCACACAAGGAGCCAAAGATTTCGGACACGTGCAGTTTGTGGGTTCATTTAAACTGGCGTTCAGCAACGATGGAGAGAAGTGGATCATTTATCAGGATGAGAAACAGCACAAGGATAAGATCTTCCAGGGAAACTTTGACAACGAGACGCACAGAAAGAACGTGATCGATCCGCCGATTTACGCTCGGTTTGTCCGCATTCTTCCGTGGTCGTGGTATGGACGGATCACCGTACGGATGGAGCTGCTGGGATGTCCGGAGGAACAGTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-42 Predicted to enable calcium ion binding activity. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).

Ensembl:

ensembl_id ENSDART00000086227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005591 lncRNA downstream 485746 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 485932 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 485939 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 522831 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00006128 lncRNA downstream 881956 42470616 ~ 42473939 (-) True XLOC_003048
TCONS_00006132 lncRNA upstream 49144 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006133 lncRNA upstream 80600 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006134 lncRNA upstream 95502 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005608 lncRNA upstream 95502 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00005635 lncRNA upstream 838209 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005602 mRNA downstream 20896 43269918 ~ 43334999 (-) False XLOC_003060
TCONS_00005604 mRNA downstream 20981 43283349 ~ 43334914 (-) True XLOC_003060
TCONS_00005603 mRNA downstream 60962 43270200 ~ 43294933 (-) False XLOC_003060
TCONS_00005600 mRNA downstream 238251 43110788 ~ 43117644 (-) False XLOC_003059
TCONS_00005599 mRNA downstream 238288 43110788 ~ 43117607 (-) False XLOC_003059
TCONS_00005610 mRNA upstream 140787 43544814 ~ 43568239 (-) False XLOC_003065
TCONS_00005611 mRNA upstream 143401 43547428 ~ 43568239 (-) False XLOC_003065
TCONS_00005612 mRNA upstream 143413 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005613 mRNA upstream 193595 43597622 ~ 43611718 (-) True XLOC_003065
TCONS_00005614 mRNA upstream 301768 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005598 other downstream 327089 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 443848 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 1224487 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1376231 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 2452658 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005609 other upstream 131933 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005616 other upstream 314733 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 331259 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 427855 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 604182 44008209 ~ 44017665 (-) False XLOC_003072

Expression Profile

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