RNA id: TCONS_00006134


Basic Information

Item Value
RNA id TCONS_00006134
length 693
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_003062
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43453171 ~ 43540184 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCCCCCTCGAGTCTCCAAAAATCACTGCACTTTCCATTCGCCGTGGAGCTCCAGCAGAGGTGAAGTTcagctctcctcctcctcctcctcctccttcatcatGTGCACGGAATAACACGCATCCAGGCCTCGTGTTTCATTAGCAAACATGCCGAGGAAGGATTTGCTGGATGTGATTTCTAAAGAGGATCTCCGTTTGGCCATTTCACGTCCAGATGAGCGGAGCATGTCTGCAGAAGAATGGAAGAGAGAGGGGAATCATGGGAAGGATTTCAGAGcggtaaaatatgtaatatattgtaCATAAGTGAAATAAATATGTGTTATATATgtgtaatatttacagtatgcATGTAATCATGtccaaaaagttttaataaaatttcCTTTTGATCCAGATATGTGCCTTTTTCTGGTTTGTTTGTCCATTTATTGTCCTGGCAGCCCAGATATGTCAGTTTATAATTAATTTAGtgtatattaaagttaatttagtGGGCGACAcggtcgcctcaaagcaagaaggtcgctggttcaagtcgcggcctggccagttggcatttctgtgtagagttagcatgttctcctcgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataagggaattgaTTAATATTGGTCGTAGTGTGTAAGTGAac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006133 lncRNA downstream 3313 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00005591 lncRNA downstream 629380 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 629566 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 629573 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 666465 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00005635 lncRNA upstream 702192 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 728437 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 840874 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 953875 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 953875 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005606 mRNA downstream 95502 43355895 ~ 43404027 (-) False XLOC_003061
TCONS_00005605 mRNA downstream 106862 43355895 ~ 43392667 (-) False XLOC_003061
TCONS_00005607 mRNA downstream 107262 43355902 ~ 43392267 (-) True XLOC_003061
TCONS_00005602 mRNA downstream 164530 43269918 ~ 43334999 (-) False XLOC_003060
TCONS_00005610 mRNA upstream 4770 43544814 ~ 43568239 (-) False XLOC_003065
TCONS_00005611 mRNA upstream 7384 43547428 ~ 43568239 (-) False XLOC_003065
TCONS_00005612 mRNA upstream 7396 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005613 mRNA upstream 57578 43597622 ~ 43611718 (-) True XLOC_003065
TCONS_00005614 mRNA upstream 165751 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005598 other downstream 470723 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 587482 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 1368121 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1519865 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 2596292 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005616 other upstream 178716 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 195242 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 291838 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 468165 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 469908 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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