RNA id: TCONS_00005609


Basic Information

Item Value
RNA id TCONS_00005609
length 136
RNA type miRNA
GC content 0.47
exon number 1
gene id XLOC_003064
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43535960 ~ 43536095 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTCCTCTGGTGACTTTTGCACTTGGAGGCGTGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTGCTGGCCGTCATAAAGCTAGATAACCGAAAGTAAGAGCCGCTTCTATCAGCAACGTATGGAGCATTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000116225

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006133 lncRNA downstream 39744 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00005591 lncRNA downstream 665811 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00006131 lncRNA downstream 665997 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00006129 lncRNA downstream 666004 42819761 ~ 42869956 (-) False XLOC_003053
TCONS_00006130 lncRNA downstream 702896 42819956 ~ 42833064 (-) False XLOC_003053
TCONS_00005635 lncRNA upstream 706141 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 732386 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 844823 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 957824 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 957824 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005606 mRNA downstream 131933 43355895 ~ 43404027 (-) False XLOC_003061
TCONS_00005605 mRNA downstream 143293 43355895 ~ 43392667 (-) False XLOC_003061
TCONS_00005607 mRNA downstream 143693 43355902 ~ 43392267 (-) True XLOC_003061
TCONS_00005602 mRNA downstream 200961 43269918 ~ 43334999 (-) False XLOC_003060
TCONS_00005604 mRNA downstream 201046 43283349 ~ 43334914 (-) True XLOC_003060
TCONS_00005610 mRNA upstream 8719 43544814 ~ 43568239 (-) False XLOC_003065
TCONS_00005611 mRNA upstream 11333 43547428 ~ 43568239 (-) False XLOC_003065
TCONS_00005612 mRNA upstream 11345 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005613 mRNA upstream 61527 43597622 ~ 43611718 (-) True XLOC_003065
TCONS_00005614 mRNA upstream 169700 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005598 other downstream 507154 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 623913 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 1404552 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1556296 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005547 other downstream 2632723 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005616 other upstream 182665 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 199191 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 295787 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 472114 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 473857 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01442232_01445146.mRNA True 1313 mRNA 0.46 4 CI01000158 1442187 ~ 1445826 (+)