RNA id: TCONS_00005613


Basic Information

Item Value
RNA id TCONS_00005613
length 393
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_003065
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43544814 ~ 43655449 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaACGAAAGCCGGAGTCTTTACAGTGAGCGGAACGAGTGAAGAGGAAAGACTGCGCTGAGGAACGACAGAGGAAGGAGAAGGAGACGAGTGTGGACTGTACTTTTGGAAGAGGAAGGAAAAAACAGACAGAAGTCATGGGGAGGAAAAAGATTCAGATTGCGCGGATAATGGACGAACGCAACAGACAGGTTACGTTTACAAAGAGGAAGTTTGGACTGATGAAGAAGGCCTACGAGCTGAGCGTATTGTGTGACTGTGAGATCGCCCTCATCATCTTCAACAGCACTAATAAACTCTTCCAGTACGCCAGCACGGACATGGACAAAGTTCTGCTGAAATACACCGAGTACAACGAGCCGCACGAGAGTCGGACTAATTCAGACATCGTGGAG

Function

GO:

id name namespace
GO:0060349 bone morphogenesis biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0030154 cell differentiation biological_process
GO:0036076 ligamentous ossification biological_process
GO:0060914 heart formation biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0045667 regulation of osteoblast differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-253 Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including animal organ development; ligamentous ossification; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including brain; mesoderm; musculature system; pericardial region; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C).

Ensembl:

ensembl_id ENSDART00000138962

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 57438 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 57454 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 57578 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 101406 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 727659 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 630518 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 656763 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 769200 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 882201 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 882201 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005610 mRNA downstream 29383 43544814 ~ 43568239 (-) False XLOC_003065
TCONS_00005611 mRNA downstream 29383 43547428 ~ 43568239 (-) False XLOC_003065
TCONS_00005606 mRNA downstream 193595 43355895 ~ 43404027 (-) False XLOC_003061
TCONS_00005605 mRNA downstream 204955 43355895 ~ 43392667 (-) False XLOC_003061
TCONS_00005607 mRNA downstream 205355 43355902 ~ 43392267 (-) True XLOC_003061
TCONS_00005614 mRNA upstream 94077 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005615 mRNA upstream 97480 43709198 ~ 43718914 (-) False XLOC_003066
TCONS_00005618 mRNA upstream 149762 43761480 ~ 43771447 (-) True XLOC_003067
TCONS_00005620 mRNA upstream 226845 43838563 ~ 43850304 (-) False XLOC_003069
TCONS_00005621 mRNA upstream 227487 43839205 ~ 43844537 (-) True XLOC_003069
TCONS_00005609 other downstream 61527 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 568816 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 685575 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 1466214 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1617958 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005616 other upstream 107042 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other upstream 123568 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005619 other upstream 220164 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 396491 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 398234 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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