RNA id: TCONS_00005617


Basic Information

Item Value
RNA id TCONS_00005617
length 537
RNA type processed_transcript
GC content 0.51
exon number 3
gene id XLOC_003066
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43705795 ~ 43759532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGAACACAAGGAGCCGCTTGTTTCTGCACACCAGAGACGCTTCAGATTTTCCACTCCTCTTCCCAGACTCAAGCGCAGCAGATGTTCGCTCCCAAGAGCTgtgtgtgtgtgaagctgcAGTCGTCCCGCGTGGCTGACAGCACGTAACACCTGCGAGATTGTCTGATGATCTCCAGGTCTGAATCTGTGGACACAAAACATCTGCTTCTCCTTCTTTCTCAGCGAGAGAAAACAAGCGAGACGCTGTGCGAGCGCATGTGTGTCTTTAACCTCCTGCCACAAGAACAACATCCCCACATGACGGTCAGCGGCACGGCCCTGCGGGGCTCTGCATGAATACAGCTTCTGAATGAGCTTTTATTTGTCCTCACACAGCATTGCTTCTTACACAAAGACCTTAAGACAGAAAACCACCCACAGTTCTGCATCACCTGCACATGTTGTGCTCTTCATCCAATCAGAATACAGCAACACAGAGGGGGCGTGGCTAGAACATCACACCACCACTGAGATGAAAGAACAGGTATTTGGGGGAG

Function

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-152 Predicted to enable calcium ion binding activity and microtubule binding activity. Predicted to be active in microtubule organizing center. Orthologous to human CETN3 (centrin 3).

Ensembl:

ensembl_id ENSDART00000134016

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 195102 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 195118 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 195242 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 239070 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 865323 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 482757 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 509002 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 621439 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 734440 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 734440 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005614 mRNA downstream 13756 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005615 mRNA downstream 16372 43709198 ~ 43718914 (-) False XLOC_003066
TCONS_00005612 mRNA downstream 79837 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005613 mRNA downstream 123568 43597622 ~ 43611718 (-) True XLOC_003065
TCONS_00005610 mRNA downstream 167047 43544814 ~ 43568239 (-) False XLOC_003065
TCONS_00005618 mRNA upstream 2001 43761480 ~ 43771447 (-) True XLOC_003067
TCONS_00005620 mRNA upstream 79084 43838563 ~ 43850304 (-) False XLOC_003069
TCONS_00005621 mRNA upstream 79726 43839205 ~ 43844537 (-) True XLOC_003069
TCONS_00005623 mRNA upstream 103485 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005622 mRNA upstream 103485 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005609 other downstream 199191 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 706480 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 823239 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005579 other downstream 1603878 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005570 other downstream 1755622 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005619 other upstream 72403 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005629 other upstream 248730 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 250473 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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