RNA id: TCONS_00005619


Basic Information

Item Value
RNA id TCONS_00005619
length 558
RNA type processed_transcript
GC content 0.39
exon number 3
gene id XLOC_003068
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43831882 ~ 43832668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacaggtttacagctcaacctctaaagtcccatatctggctgaggagactggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatactcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacagtagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggagacattcagcaaatcaacaagaagaggcgaTACATccaagatgtgctaattatacaaaaaaatttaagaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtgggaagcagacttcatgcacaatgttttgtttttttgttttttagatatagggagtggttgtaagaaagtgtctggtgcaaatgtgcataaatggtgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtcatggttggtctaatttatggtgtagtgctgatcgtgttactttgctttaaaatgttaatctttc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 291698 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 291714 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 291838 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 335666 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 961919 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 409568 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 435813 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 548250 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 661251 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 661251 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005618 mRNA downstream 60435 43761480 ~ 43771447 (-) True XLOC_003067
TCONS_00005614 mRNA downstream 110352 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005615 mRNA downstream 112968 43709198 ~ 43718914 (-) False XLOC_003066
TCONS_00005612 mRNA downstream 176433 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005613 mRNA downstream 220164 43597622 ~ 43611718 (-) True XLOC_003065
TCONS_00005620 mRNA upstream 5895 43838563 ~ 43850304 (-) False XLOC_003069
TCONS_00005621 mRNA upstream 6537 43839205 ~ 43844537 (-) True XLOC_003069
TCONS_00005623 mRNA upstream 30296 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005622 mRNA upstream 30296 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005624 mRNA upstream 33118 43865786 ~ 43866387 (-) True XLOC_003070
TCONS_00005616 other downstream 72350 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 72403 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005609 other downstream 295787 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 803076 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005596 other downstream 919835 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005629 other upstream 175541 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 177284 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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