RNA id: TCONS_00005621


Basic Information

Item Value
RNA id TCONS_00005621
length 2406
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_003069
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43838563 ~ 43850304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTGTTGCGTTCTTTTTGCTATGTACGGTCCACTCATCTGAAGGCTACAACTGGGCTTGGAGAAAACTCCCCTGCGATGTGAATCTCTCCAACACATCCGTCACCTTGGACTGCTCAGAAAGATATTTAAAGAAAATCCCCAAAAACCTGATCTGGAACACAACTAATCTAAACTTAGCAAACAACAAAATACATAACATCTCAAAGGACGCCTTCTGGAACTTAAACAACGTCACATGGATAGACCTAAGAAGAAATCAGATTGAAAAATGCCACGAAAAGGACAATGGGGTTTTCTCAAGACTGACCAACCTGAAGACTCTGCTCCTCGACAATAATAAGATTTCGGTTTTACCCAAAAATCTCCCTGCAGGTCTGCAATGGCTGAGCCTCAATTCCAACCACATCAAATCAATTGAACAGTCAGACTTTAAAGGAATGACTAAACTCACGGTTTTAAAACTAAACAAGAACTGCTATCATAACATCAGTGCAGAATTAACCATTCAGAATGAGACGTTTCAACATTTACAACTGACTGAGCTACAACTGTCCAAAAATGGACTGCATAATGTGCCGTTTGCTTTACCCAGAACCCTTCACAATCTCTCTCTTCTGCTAAACAGGATTGATCATGTTCATGAATCTGATCTAAACCATCTAACACGTCTAAAAGTTCTTGATTTATCTGGAAACTGTCCTATTTGTTTTACCACTCCTTTCCCATGCACAAGCTGTCAGACAAACAATAACGCTCTACAGATTCATCCGAATGCATTCAGCAAACTATCCCAACTGCAAGACCTACGACTATCCGGAAATTCTTTACAAAGCATCAACTCTATGTGGTTCCAAAACCTGACCAACTTAAAGTACTTATATCTTTCCTTTAACTCGCTAATAAGCGAATTTGAAAGCGGACAATTTTTTAGCGTCCTACCGCAAGTGGAGGTTGTCGATATCTCCTACAATAACCCATCGGAAAGGATTTACCCGAGACTAAAACTCTCTGAAGGTTTCTCCAGATTGGAATCCCTCCAAACGCTTCACCTGGAAGGCTATATTTTCCACAAGCTCTCCGAAGACGACCTCCGACCTTTATTTAGTTTACGAAATCTCTCCGTTTTAAATCTGGCCGTCAACTTTCTCCAGCAGGTCAACTTATCGGTGTTCAGGAACTTTCACAACTTGTCTTTAATTTCGTTGATTGACAACAGGCTAACTTTCTCAAGTCCTATCCGAAGATGGGAGGGTCAAAGTAAAAGTGGTTTTAAGGATGATAATCAGGGAGACCACCGCGAAGGACCTTACATTCACACAAATGAAGAGTTCCGCCATTATCCTCCATTCACCAAAGCCGAGTGTCTTGCAACTGGACCAGTTTTGGATCTCAGCAGGAACAACATTTACCACGTCAATCCACCTTTATTCACAGGAGCGGAGAACATCACTTGCCTCAATCTTTCCTCCAATTTCATAGTTTCCTACTTCAACGGCACAGAGTTCGCCCACTTTCCCAAACTCAAGTACCTTGACCTATCTCACAACAGAATCTACATGCATTCAGATTCGGCTTTGAGTGAACTGAAGGCATTAGAAGTTCTGGATCTGAGTCACAATCAACATTATTTTGAAGTGGCGGGTGTCAGAAACTGTCTTACATTTCTAGAAAACCTTCAGTTTCTCAAAGTACTCAATCTGAGTTGGAACGAGATCAACATGCTGACCAATAAAACCCTGCAAAGCGACTCGCTCAACGAACTGCAGTTTCAAGGCAATCGATTGGACATCATGTGGAAGAAGCAACGCGGATACCAAAGTCTCTTTAAATCCCTTTCAAATCTTACATACCTTGATATATCGTATAACAAGCTTAGTGAGATACCAGACGACATCTTCGACTACTTTCCAAAGACGCTAAGATATATTAGCATGAGCAGGAACACGCTCACTGATTTTGCGTGGGAACAGCTCCAAAGTTTACCCCAGCTGGAAACTCTGGATCTGAGTAAAAACAAACTGAGGGTAGTCCCTAGGAAACTATCAAAGCATACACGTTCACTGAAGGTCTTAGACTTGAGCCATAATCAGATCTCAAAGTTAAGGTACAGCTTTCTCGAAAATGTCAAAAGCCTTCAGATCCTCAACTTTGCCAACAACAAGCTGAAGCATCTCGGCGCATCGTCCTTCACAACTGGCAGCAATCACCAGCTGCAAATACTCGATCTGCAGAGAAATCCCATCCACTGCACGTGCAACCTTTTAGACTTCATTCTCTGGTTGGAAAAAAGTGACACGATCCTTCCTCGGCTAGCAACCGATGTCTTATGCGACCTTCCAGAATCCAAAAGAGGGCATCCGATGGTCAGTCTGGACTTTAAAAACGCATGTATCAACAACAGC

Function

GO:

id name namespace
GO:0034158 toll-like receptor 8 signaling pathway biological_process
GO:0045087 innate immune response biological_process
GO:0045089 positive regulation of innate immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0002376 immune system process biological_process
GO:0051607 defense response to virus biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040219-12 Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within inflammatory response; innate immune response; and toll-like receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in blood; heart; integument; and musculature system. Orthologous to human TLR8 (toll like receptor 8).

Ensembl:

ensembl_id ENSDART00000114208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 299021 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 299037 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 299161 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 342989 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 969242 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 397699 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 423944 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 536381 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 649382 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 649382 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005618 mRNA downstream 67758 43761480 ~ 43771447 (-) True XLOC_003067
TCONS_00005614 mRNA downstream 117675 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005615 mRNA downstream 120291 43709198 ~ 43718914 (-) False XLOC_003066
TCONS_00005612 mRNA downstream 183756 43547440 ~ 43655449 (-) False XLOC_003065
TCONS_00005623 mRNA upstream 18427 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005622 mRNA upstream 18427 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005624 mRNA upstream 21249 43865786 ~ 43866387 (-) True XLOC_003070
TCONS_00005625 mRNA upstream 91715 43936252 ~ 43964028 (-) False XLOC_003071
TCONS_00005626 mRNA upstream 98467 43943004 ~ 43964028 (-) True XLOC_003071
TCONS_00005619 other downstream 6537 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 79673 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 79726 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005609 other downstream 303110 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 810399 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005629 other upstream 163672 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 165415 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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