RNA id: TCONS_00005623


Basic Information

Item Value
RNA id TCONS_00005623
length 5399
RNA type mRNA
GC content 0.42
exon number 20
gene id XLOC_003070
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43862964 ~ 43928937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAGCGAGTATGGACGTGGATGATGTTTCTCCATCCCATCAGCAGCAGAATCAGCGGGGCTTGTGGAAATCTTTCCACGGTAAATCCAAACTCCCTGGCAGCCCCAAACTGAGCAAAAAAGCCAGAAAGCCAGAAAGTGTGTTTcggatatttaaaaagaagcgtGATCATGGCTTGGACCGAGCTGTGTCTTCATCTCAGCCCAATCTGCACAGCGCAGCAGCGGACGGAGAAGGCAGCGGGAGGACGCGCTGCGGCACGCCGGAGATGAGTGCCTGTACGGCGGCCGCGGCTGCAGCGTCGCTCGGTGCGGAGATCCAGATGCTGAAAAGATCCGGCAGCCCCAAACCGACGCTCTCCCAGCTGCTGGAGTCTCAGTATAAGCCTGCTTCCACATGCACAGATGATGCACAGACGCACAGTGATGAAGAACAGGGCGATAAAAGTGTGGGTGTTACTACAGTTGCTAAGGGTGCTGTACAGCCTGCACTGCCCACTTCAACACTGTACCAGCTGGATATCGTGCTGAAAAGAGGAAACAACCTCGCCATTCGAGACCGCGCCGGAACGAGTGACCCATATGTGAAGTTTAAATTAGCCGGTAAAGAGGTTTTCCGTAGTAAAATCATCCAGAAGAACCTGAACCCGGTTTGGGATGAACGCGTTTGCCTAATAGTGGACAACCTTAAAGAGCCTCTGTATATGAAGGTGTTTGACTATGATTTTGGCCTTCAGGATGATTTTATGGGCTCGGCTTACCTTTACCTGGAGTCTCTGGAGCAGCAGAGACCTCTTGATGTTCGGCTGGACCTTCAGGACCCTCACTGCCCTGATCAGGACTTGGGCTCTCTAGAGCTGACGGTCACTCTTTACCCGAGAAGCCCAGCGGACAGAGAGGCGCTCAGACAGcagcagcagcagatgcAGCAGCAGAGTCCCCGTCTGTCAGATCTGCACAGAAAGCCTCAGATGTGGAAGGGTATTGTGAGCATCAGACTCATCGAGGGACGAAATCTCATCGCGATGGACCAGAATGGCTTCAGCGACCCTTACGTCAAGTTCAAACTGGGCCCTCAGAAGTACAAGAGCAAGACAATTCCCAAAACCCTGAACCCGCAGTGGAGGGAGCAGTTCGACCTGCATCTGTACGATGAGGAGGGAGGAATTCTGGAGATTTCTGTCTGGGATAAAGACATCGGGAGGAGAGATGACTTCATCGGCCAGTGTGAGCTGGAGCTGTGGAAGCTGAGCCGAGAGAAGACCCACAAGCTGGAGCTGCATCTGGAGGAGGACAAGGGCACGCTGGTGGTTCTGGTGACGCTCACCGCTACAGCCACCGTCTCTATCTCTGACCTGTCTGTAAACCTGCTGGACGACCCAGACCAGCGGCAGCACATCAGCAGGAGATACAGTCCGCTCAAGTCCTTCTTCAATCTGAAGGATGTGGGGATTTTGCAGGTGAAGATCCTGCGGGCCGAGGGGCTGATGGCTGCTGATGTCACAGGAAAGAGCGACCCGTTCTGCATCGCGGAGCTGTGTAACGACCGTCTGCAAACACACACCGTCTACAAGACTCTGAACCCCGAGTGGAATAAAGTCTTCAGCTTtaatgTAAAGGACATCCACTCAGTGCTGGAGATCTCAGTATATGATGAGGACCGAGACCGCAGTGCTGACTTTCTGGGAAAAGTGGCCATCCCTTTATTAAACatctgcagCAGCCAACAGAAGGCCTACGTCTTGAAAAACAAGGAGCTGACAGGGCCAACAAAGGGGGTCATCCTTCTCCAAGCGGACGTCATCTTTAACGCCGTGAGAGCCAGTTTGCGGACGTTTGTTCCTGCAGAACAGAAGTACATCGAGGAGGAGGCGAAAGTCTCTAAACAGCTGCTGCAGCAGAATTTTAACCGAGTGAAGCGCTGCGTCCTCTTCCTCATTAATGTGGGCTACTACATCAACAGCTGCTTCCAGTGGGAGTCTCCACGCAGGAGTCTGTGCGCTTTCCTGATCTTTGTGGTGGTGGTCTGGAATTTCGAGATCTACATGCTGCCGTTGTCTTTACTGCTGCTGCTGATCTGGAATTACCTCCGGAAGGCCTCTGGGAAGGGGACGTGTGAGGGAAATGTGGAAGTGATGGAGGATCTTCTAGAGGACGTGGATGAAGACTCTGACAAAGAAGACAAGGACTCTGAGAAAAAGGGCTTCTTGGACAAATTCTACGCAATTCAAGATGTGATTATAACAGTTCAGACCGCTCTGGATGAAGTGGCCAGCTTCGGGGAACGAGTAAAAAACACGTTTAACTGGTCTGTGCCTTTTCTGAGCTGGTTGGCCATAACAGTGCTGTGTGCCGGTGCTACCATAACATATTTCATCCCACTGCGATACATCGTGCTGGTCTGGGGTATCAATAAATTCACCAAAAAACTTCGAGCCCCCTACAGTATCAATAATAACGAACTGCTGGACTTTCTGTCTCGAGTTCCTTCAGACATCCAAATGGTTCAATACAAAGAGCTGAAAGCGGACGCCAATCAGAGTCCCAATAAAAAACGGAGGAACAACCCTGGATAAATAAAACGTATTACCCGTCTAAATCAGCAATTCAACGGAAAGACGTTAAGAAAAGGAGACGGCAAGAACTATTTCCATCATTATGCAGAATTGCACAACTATGATAGCACAAACAAATCAAATAGAGTtcataaaatgtacttttatttatttatatacctaTTTTTACTCTCCATCACTGATTCACAATCAGcatcatttttatatatacaaaaaataagaGCACAAGAAGTTCTGTAAATAAAGATGCTGCTGGACTTGAGCTTGTTTTATTCATGTGAGCTCAACAGCTGTAAAACATGTGCCTACCACAGATTAAACTCATTAAGTGTAGCTTTTACATTAGGTTTGGTTTGTAGTCTCAAAATAGGAGGGCAGGTCAATCggagtggcctctggtggatttgtgtgaGAAGAGCAGAATGATATCTTATATAGCTGATTAATCATGTGGATGgttgataacagccttctgagcctaccagcaGGCGCAGAAggtccctactggcccatatctatcagctgataaccataAAGCCTATTTAATAGACTGATAACATTTCTCtgaaattacagtgtgtgtgcagaaatacatTACTGTGTATTTTGAGTTTTGAGACATCAATAAGCGTATAAATGTCTCTCACATGGACACACAAATGCTATActtcatataaaagccagaaactaagctttttttgtaCTGCAACTGATAATCATCAGTAAAAATGAGCAATGTTTCCGCTTCCCAAcaaggaaaaccaccaacaatcatgTCATTATAACAGAAGTCAAAGTAGCAAAACAGCCACTAACACAACGAaaaggtagtcaatttgcccTCAGTAAGTTTTTGAAAaagtttaaagccttttttttctaaaatatgtgtcaaaataagatttgccagcaaaaatcattccatttactgaaacacagagaaagttgtggcaaatcaccccagagtggatgaaaacatccccaacagcataCAAGGGTTGCTAATGgttacactttacagtaaggtttactaacatgaacaatgaacGATACATGTATTACAATTTTGTTAATGTTaggtaatgattaaagtaattgGCTGTTAGTTCTTATTAACCTGTAAACAAGCGCAACTTTGGATTTTAagggtgcagtatgtaagtttgacacccagtggttgaacttggtattgcactcctggatcaaaacatgtgcaagtgcaggttgccagattgacgctAGTGCACCTGAATGTTGAGCCTAAAGGCTAATTTAAACTTTTTCTAACTAAAAGCAACAGCATgtgatagaagaaatattttttgtaatatttatactatttgctaattattaacatatggaactctgaatctgcatctcattttggagtctgctactatCCACCGGGGGTCTCATTTCAGTCACGGATGCACACTTTGGGAGTCTTCCTGAtcgaatgaatggatgaaattcgctcttttccatcaaggcaacccgggagctgaaatataattggctgaagaGGCATCGGCaggttaaagagaccaaaacaaagacagccgttccggCACATAAcgcacatgttcaaagcagaaaatctgacttcagcattgtttctcAGATATCAAAAATATAGAATCAAAAActgacatacagcacctttaatagtGCATTAGTAAAGTTGTTTaactatgattattaataaatgcaataCATGTAAGTTGATctaaagtaaatacattaactagcattaactaatgaaaccttatagTAAGATGTGACCGATATTACATATGCAACTCAACACAGTGGGTTTTCGTAAACACCACCAAAACTTTTATGCACTTTTTGTGTCGTATTCATAATTATCGCCCTAAATAATAACTTTCATCAGCAAGCTCATATTTTATGCAAAAGACAGCATGCTGTATGtgtgtatcaaaataaagtgactgtAAATATGagtgtaaaaatgtacaaatgtttaCGACAGATGTCATATGCTATGATTATTGCTCATATGCTATGATGAATGATGTTTCATTATAATATTTGTACATCCTGCTGCTTGTCAATGAGAATGAATGTAAAAGCATGTATAAgcagatatacagttaaagtcagaattattcgcccccctgtttatttttttccccaatttctgtttaacggagagaagattatttcagcacatttctaatcataatagttttaataactcatctctaataactgatttattttatctttgtcataatgacagtaaataatatcagaccagatattctttaagacatcactaggcttcactaggttaattacggtaactaggcaggttagggtaattaggcaagttattgtatatcgatggtttgttctgtagactatcgaaaaaatatatatagcttaaaggggctcataatttatccttaaaatggcttttgaaaaattaaaagctgctttaactctagccgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaacgtttccttgctcttttaaacattatttgggaaacatttaaaaaagaagaaaaaattcaaaggggggcgaataattctgacttcaactgtgcgtaAAAAGAAAGTTATGAATGATGGATGGTTAAAAGAAAACTGCATGTTCATTCAGGGCTGGAACCGAACAATAAAAATCAAAACATTGAGCTATCTATTTTCTCAAACAATCATCTGTAtggaaataatagtaataataataataaaacaaatctaaatgatTGCTTTTATGGTTTCATTTATAGATCAAAAATCATC

Function

GO:

id name namespace
GO:0046928 regulation of neurotransmitter secretion biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-382 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of neurotransmitter secretion. Predicted to be located in membrane. Predicted to be active in synaptic vesicle membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; embryonic structure; notochord; optic cup; and pronephric duct. Orthologous to human MCTP1 (multiple C2 and transmembrane domain containing 1).

Ensembl:

ensembl_id ENSDART00000168014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 322780 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 322796 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 322920 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 366748 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 993001 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 313299 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 339544 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 451981 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 564982 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 564982 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005620 mRNA downstream 12660 43838563 ~ 43850304 (-) False XLOC_003069
TCONS_00005621 mRNA downstream 18427 43839205 ~ 43844537 (-) True XLOC_003069
TCONS_00005618 mRNA downstream 91517 43761480 ~ 43771447 (-) True XLOC_003067
TCONS_00005614 mRNA downstream 141434 43705795 ~ 43721530 (-) False XLOC_003066
TCONS_00005615 mRNA downstream 144050 43709198 ~ 43718914 (-) False XLOC_003066
TCONS_00005625 mRNA upstream 7315 43936252 ~ 43964028 (-) False XLOC_003071
TCONS_00005626 mRNA upstream 14067 43943004 ~ 43964028 (-) True XLOC_003071
TCONS_00005627 mRNA upstream 70326 43999263 ~ 44017652 (-) False XLOC_003072
TCONS_00005628 mRNA upstream 70329 43999266 ~ 44008241 (-) False XLOC_003072
TCONS_00005630 mRNA upstream 79351 44008288 ~ 44017642 (-) False XLOC_003072
TCONS_00005619 other downstream 30296 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 103432 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 103485 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005609 other downstream 326869 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 834158 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005629 other upstream 79272 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 81015 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01602975_01638158.mRNA True 2793 mRNA 0.49 21 CI01000158 1602922 ~ 1638158 (-)