RNA id: TCONS_00005625


Basic Information

Item Value
RNA id TCONS_00005625
length 1192
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_003071
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43936252 ~ 43964028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAGCGGCCGGGATGACGAGCAGCGCCAGGTACAAGAGCAGGACGGTGAAATCAGAGGATGGAGAGGAGAAAGAGTATGTTGGTTTCGCCACACTCCCCAATCAGGTTCACAGGAAGTCGGTGAAGAAAGGGTTTGATTTCACGCTCATGGTGGCAGGAGAGTCTGGCTTAGGGAAATCCACACTGATCAACAGCTTGTTCCTCACAGACCTGTACAAGGACCGCAAGCTGCTGAACGCTGAAGAGCGCATCAGCCAGACGGTGGAGATCATCAAACACACGGTGGACATCGAGGAGAAAGGAGTCAAGCTCAAACTCACCATCGTGGACACTCCGGGTTTCGGAGACGCCGTCAATAACACAGAGAGctggaGGACCATCACTGACTACATCGAGCAGCAGTTTGAGCAGTATTTCCGGGACGAGAGCGGCTTGAACAGGAAGAACATCCAGGATAATCGTGTTCACTGCTGCTTATACTTCATCTCTCCATTTGGACACGGgctgcGGCCGGTGGATGTGGAGTTTATGAAGGCTCTGCAGGACAAGGTGAACATCGTACCGCTCATTTCCAAGGCCGACTGTCTGACGCCGGCGGAGATGAGGAAGATGAAGGACaggGTGAGGGAGGAGATCGAGAAGTTCGGCATTAAAGTTTATCAGTTTCCAGACTGTGATTCAGACGAGGACGAAGAGCTGAAGCAGCAGGACCGAGAGCTGAAGGAAAGCACTCCATTTGCTGTGATTGGGAGCAACACTATAGTCGAGGTCAAAGGTCAGCGGGTGAGAGGGAGACTTTACCCATGGGGCATCGTGGAAGTGGAGAATCAGTCTCATTGTGATTTCGTCAAGCTGAGGAACATGTTGATTCGCTCACACATGCACGACCTGAAGGACATCACATGCGACGCTCACTACGAGAACTACAGAGCGCAGTGCATTCAGCAGATGACCAGCAAGCTGACGCAGGATAATCGTGTGGAGAGTCCCATCCCGATCCTGCCTCTGTCCACCCCTGATGTAGAAACAGAGAAACTGATCAAGATGAAGGATGAGGAGTTGCGGAGGATGCAGGAGATGCTTCAGAAGATGCAACAGCAGATGCACGAGCAGGACCTGTGAAAACACTCACCCTTTAACCACAAGCAGACACTCAACACTTTAACACACACTGAAGGATGTGGAGGAGg

Function

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0034613 cellular protein localization biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0032153 cell division site cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-43 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to be located in cytoplasm. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in brain and retina. Orthologous to human SEPTIN5 (septin 5).

Ensembl:

ensembl_id ENSDART00000009134

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 396068 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 396084 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 396208 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 440036 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 1066289 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 278208 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 304453 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 416890 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 529891 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 529891 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005623 mRNA downstream 7315 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005622 mRNA downstream 7315 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005624 mRNA downstream 69865 43865786 ~ 43866387 (-) True XLOC_003070
TCONS_00005620 mRNA downstream 85948 43838563 ~ 43850304 (-) False XLOC_003069
TCONS_00005621 mRNA downstream 91715 43839205 ~ 43844537 (-) True XLOC_003069
TCONS_00005627 mRNA upstream 35235 43999263 ~ 44017652 (-) False XLOC_003072
TCONS_00005628 mRNA upstream 35238 43999266 ~ 44008241 (-) False XLOC_003072
TCONS_00005630 mRNA upstream 44260 44008288 ~ 44017642 (-) False XLOC_003072
TCONS_00005632 mRNA upstream 57119 44021147 ~ 44026369 (-) False XLOC_003073
TCONS_00005633 mRNA upstream 57196 44021224 ~ 44027391 (-) True XLOC_003073
TCONS_00005619 other downstream 103584 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 176720 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 176773 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005609 other downstream 400157 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 907446 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005629 other upstream 44181 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other upstream 45924 44009952 ~ 44015739 (-) True XLOC_003072

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU414778 True 2178 lncRNA 0.42 12 CI01000158 1640154 ~ 1654589 (+)
bowfin (Amia calva) AMCG00018607 True 1125 mRNA 0.56 11 CM030135.1 14880599 ~ 14885351 (-)
mexican tetra (Astyanax mexicanus) TU414778 True 3142 lncRNA 0.49 19 NW_019172833.1 1939830 ~ 1955972 (-)