RNA id: TCONS_00005627


Basic Information

Item Value
RNA id TCONS_00005627
length 1547
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_003072
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43999263 ~ 44017665 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCCAAGATGGCGGCGCTTTTCAAAGCCCAGAGAGtggtGATGGCGTTGGGTCGAGGTGTTCGGTGTTTAACCCAGCTGGCGGAGCTGCCGGAGCTGCATCAGATGATGAGGCAGACGTGTCGAGATTACGCACAAAAGGAGCTCGCGCCAATCGCTGGACTGCTGGACAAAGAGCACAGGTTTCCAGCCAAACAGGTTCAGGAGCTGGGAGCGATGGGTGTGATGGCTGTGGAGGTGCCAGAGAGTTTGGGTGGAGCAGGAATGGATTATCTGGCCTATTGTCTGGCTGTGGAGGAGCTCAGCAGAGGATGTGCATCGACAGGAGTCATCGTCAGTGTCAATAACTCGCTGTACATTGGTCCAATTCTGAAGTTTGGCTCAGAGGAACAGAAGAAGCAGTGGATTACACCCTTCACCACGGGGGAGAAAGTGGGATGTTTCGCGCTGAGTGAACCAGGAAACGGCAGTGACGCGGGTGCGGCGTCGACATTAGCGCAGCAGGAGGGAAACGAATGGGTTCTCAATGGAACCAAAGCCTGGATCACCAACAGCTGGGATGCTTCTGCCACCGTCGTCTTCGCCACTACAGACAAGAGCCTCAAACACAAGGGGATTAGTGCCTTCCTAGTGCCGATGCCTCATCCAGGGCTGTCTTTAGGGAAGAAAGAAGACAAACTGGGAATTCGAGCTTCATCCACTGCCAACATTATCCTGGAGGACTGTCGAATCCCGCTCGGAAACATGCTGGGGGAGCGAGGAATGGGCTTTAAGATCGCAATGCAAACTCTGGACAGCGGGCGGCTGGGGATCGCAGCACAGGCTCTCGGTATCGCACAGGCAGCTCTGGACTGTGCCGCTGACTATGCTCATAAAAGAACAGCTTTCGGCGCTCCGATTGGGAAACTGCAGGCAATACAGTTTAAACTGGCAGACATGGCCGTGGCTATAGAGAGTGCTCGACTGCTCACCTGGAAAGCTGCACTTCTGCGCGATGCAAAGAAACCTTTTACTAAGGAAGCTGCCATGGCCAAACTGGCAGCATCTGAAGCTGCTACTTTTGCCTCTCATCAGGCCATCCAGGTGCTTGGAGGAATGGGTTACGTCACAGATATGCCTGCGGAAAGACACTACAGAGACGCCCGCATCACTGAGATCTACGAGGGAACCAGCGAGATCCAAAGACTGGTCATCGCAAACAACATCCTAAAAGAGTACCAGCAATAGGAGAGCTGATGTTTAATCTGTCACTGTGCCTGGATTGGCTAATGGGGTCGGTCACATGATCTCAGGACTGTATTATTGTGACTGGCCAGTGCTGAATGAAGATGTTTTTGAAGTGCATTTGCTTATTTGTGCCACAAGAGTGCAGTAGAGCGTCCAGATCTTCTGCCTTGTATGGGTCAGAAGGACTAACCACAGTTAAACTGAAAGCCTCACTTGATGATTTCACTGGGAATGTAAAAGCATATCTGACTGTACATAATGAGTTATATGTATttctaatgcattttaaaataaataaatgatgatattAAGTTTACAAA

Function

GO:

id name namespace
GO:0046359 butyrate catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0004085 butyryl-CoA dehydrogenase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00650 Butanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation
ko00410 beta-Alanine metabolism

ZFIN:

id description
ZDB-GENE-040808-64 Predicted to enable butyryl-CoA dehydrogenase activity. Predicted to be involved in butyrate catabolic process. Human ortholog(s) of this gene implicated in short chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADS (acyl-CoA dehydrogenase short chain).

Ensembl:

ensembl_id ENSDART00000014669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 459079 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 459095 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 459219 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 503047 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006131 lncRNA downstream 1129300 42819956 ~ 42869963 (-) True XLOC_003053
TCONS_00005635 lncRNA upstream 224584 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005636 lncRNA upstream 250829 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 363266 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 476267 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 476267 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00005625 mRNA downstream 35235 43936252 ~ 43964028 (-) False XLOC_003071
TCONS_00005626 mRNA downstream 35235 43943004 ~ 43964028 (-) True XLOC_003071
TCONS_00005623 mRNA downstream 70326 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005622 mRNA downstream 70326 43862964 ~ 43928937 (-) False XLOC_003070
TCONS_00005624 mRNA downstream 132876 43865786 ~ 43866387 (-) True XLOC_003070
TCONS_00005632 mRNA upstream 3495 44021147 ~ 44026369 (-) False XLOC_003073
TCONS_00005633 mRNA upstream 3572 44021224 ~ 44027391 (-) True XLOC_003073
TCONS_00005634 mRNA upstream 222192 44239844 ~ 44241119 (-) True XLOC_003074
TCONS_00005637 mRNA upstream 279211 44296863 ~ 44341288 (-) True XLOC_003077
TCONS_00005638 mRNA upstream 284568 44302220 ~ 44305180 (-) False XLOC_003078
TCONS_00005619 other downstream 166595 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 239731 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 239784 43735286 ~ 43759479 (-) True XLOC_003066
TCONS_00005609 other downstream 463168 43535960 ~ 43536095 (-) True XLOC_003064
TCONS_00005598 other downstream 970457 42992846 ~ 43028806 (-) True XLOC_003058

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01674288_01681153.mRNA True 1660 mRNA 0.47 9 CI01000158 1673678 ~ 1681153 (-)