RNA id: TCONS_00005635


Basic Information

Item Value
RNA id TCONS_00005635
length 1303
lncRNA type lincRNA
GC content 0.51
exon number 3
gene id XLOC_003075
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44242236 ~ 44253104 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTGACTGCTAGCTGAAAGTGGAACACTgctagtgttgtgtgtgtgtgacgcgtCTCTGTTCTCTCAGTGTGCAGACGGCGGTGGAGTCGTTCTCCAGAAAGAGAGATCTCGACTCCCTGTCCAGCGTGGGCTCCAGTGTGGGCACTGAAGACGTTGGTGAAGGGATCCGTCATTGGGCCGGTGTGCCACGAGGACCCGGAAGCAGCTCCGGACGGCAGTCTGTCACCGACACTATGAGCAACTACAGTTTCAGATCTTGCACTCAGGACCTGGATGAAGATGTAAAAGAAAGTTCTGGAGGTCTCGGGAGAGCGTCTTCATCCACGGCTCTCTCCGAGCTCCTGGAGGGTCTGAGGAAGAAGCGCGTCGGCTGGGAACAAGGCTCAGATGTGGGTGAAGGCAGCACCGTTTCTCTGCCCATCTACCAGACCACAGGAGCTTCAGCTCTACGCCGCAGAGCCTCCGCACTCTCTCTAGAAGCTGAAGAAGGTTTAGAAGAGCTGCCTCGACCTGGAATACTCAAACCTCCCAGTCCACATCTCCCCCGCGCCTCCAGCCTCCGCTCGCTTCCAGAAGAAAAACCAGCAGTGAGTCCAGCCACTGCTACTGTGATGGGGAAAATGAACCGATTCAGCTCCTGCGACTCTCTGACGTCCAACACAAGCTCCCGACGGCAGATCTCCACCCTCGCTATcccagaagaagaggaggagagtaACACAAAACCCTCGCCTACTATTGGGTATCAGCCTGTGCGCCGGCGTCTGCTAGGCGGATTGGTTGCCGAATCCGGAGAGTCACATTTAGGAGCAGAACCGCTAGTTTTCCAGAACCGCAGACTCCTGGCCAGCACTCAGGTAGGGCTGTGCGGTTAATTAAACTTCCATTCATTTGTTTTGAACAGAATACACTTTAATACAATTATCCAAACTgaattcaggtttatttgtacAGCTCTTTCCACAATAATTATTGATTCAAAGCAGCTTACAAAAGGTGCATCACAGTCACATCACAGAATACGGTTCAGAACAATTATTGTGATGATTTTTTGCAATTAGCAAAACAATTACATATCTGTGTAAACCCAAACTGTAAAATGGCTCTTAaagtgagaggggtctggatgcagacctggtgcagttgcaatctgagctgcatccaatgctttttaatgtgctcacctaaccccgcCCCTTACAGTGACGTCAcccgctccatttgagtgcattgtgtctgacattgcattgctgagtgatgcagtctcagcttgcatcataaaggctgcatccagatactg

Function

GO:

id name namespace
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0006414 translational elongation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005608 lncRNA downstream 702052 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 702068 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 702192 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 746020 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00005591 lncRNA downstream 1372087 42799115 ~ 42870149 (-) False XLOC_003053
TCONS_00005636 lncRNA upstream 15377 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00006135 lncRNA upstream 127814 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 240815 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 240815 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006136 lncRNA upstream 721132 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00005634 mRNA downstream 1117 44239844 ~ 44241119 (-) True XLOC_003074
TCONS_00005633 mRNA downstream 214845 44021224 ~ 44027391 (-) True XLOC_003073
TCONS_00005632 mRNA downstream 215867 44021147 ~ 44026369 (-) False XLOC_003073
TCONS_00005627 mRNA downstream 224584 43999263 ~ 44017652 (-) False XLOC_003072
TCONS_00005630 mRNA downstream 224594 44008288 ~ 44017642 (-) False XLOC_003072
TCONS_00005637 mRNA upstream 43759 44296863 ~ 44341288 (-) True XLOC_003077
TCONS_00005638 mRNA upstream 49116 44302220 ~ 44305180 (-) False XLOC_003078
TCONS_00005639 mRNA upstream 49116 44302220 ~ 44306399 (-) False XLOC_003078
TCONS_00005640 mRNA upstream 49116 44302220 ~ 44306636 (-) True XLOC_003078
TCONS_00005641 mRNA upstream 56893 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005629 other downstream 224571 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 226497 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 409568 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 482704 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 482757 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01792648_01806569.mRNA True 2304 mRNA 0.50 6 CI01000158 1792648 ~ 1807235 (+)