RNA id: TCONS_00005636


Basic Information

Item Value
RNA id TCONS_00005636
length 1933
lncRNA type lincRNA
GC content 0.46
exon number 5
gene id XLOC_003076
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44268481 ~ 44275885 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTCTCCACACACACTCGGGGGTGTAATCATGTCCACTGATGACAGCATCTCGGAGGACGCGTCCAGCTCTGTGGCCCTGAGCCACGAACATGGAGGAAAGCAGAGCGAGGCGTCTGGAGGATCCTCAGAAAGACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacacacataaacaaacaaacacacacacacacacacacacacacacacacacacgtgctgcTATTGTagacattcagtcattttctttcggcttagtgccttattgATATGGGggcgccacaacggaatgaaccaccaactattccagcatatgttttacatggtggatgcccttccaactgcaacccagtactgggaaacacttatacacactcatttacacacacacattcatacactacggccagtgtagttgatcagttcccctaaagcgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagagaccttcttgctgtgaggccacagtgctgaccactgcgccactgtgccgcCCATTAAAGAATAAGATATTAAAAAGTTGTAGGATTTAAGCTGCTGATGAGTCTTGATGATCAATATTCGTGTGGGGTATTGCTTTATAAAGTCCTCTATAACATATTGACTCATCTGCTCTGTGTAGTGTTGCTTTAATCACTATTAGTCATTCTGATTAAAAtaactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccgcaGGAGTCTGTGTCTGGGAAGCGCAGGCCGCAGTTTGCCCTTCATCAACCCCAGCTCCATGGAGACTCTGCGGGCCCTGGTGCAGGAGATCCAGAGCAGCGGAGAGACCGACCCCCAGATCTGGAGGAACTGTGAGGGCCGCTGGCTGCATCTGTTTCAGCTGGTGGAGAAACAGTATCAGGAGCAGATCCTGGCCCAGCAGGAGCAGTACCAGTGCCAGATACAGCTCATCCAGGATGAAATTAAAGCTTTAGTGCAGCTCCAGAACAGGCAGACTCCGTCTCAGGACGCCGCCCGCAGCCCCAGACCCCTACAGGACCCGGCGGAGAGCAGGTCAGAGGAGGGCATGCTGACGGTGGAGAGCAGCGGGTACGGCACGCTGTCGGCCTGGGAGCAGGCGCTGGACTCCGGCAGACAGGAGGCGCTGCTGTGGTCCCCCAACCCCAGCCTGACCCCGTCCCCGTCCCCGGGCCCCCAgaacacccacaaacacacacgcatcaGtcagCCCCTGACCTCGTGGGCTCAACGGCACAAACAGAAGAGGAGCGGTGTGTGTGCGGCgcagcagcagcagaagagcgCAGCAGGATCTCCAGAGCAAACACACACTTCACCCTCGTGTGTGAGCAGTGCAGTCTCGCTCGGTGTGATTCCTCTACAGAGAGCTGACAGCGTGGCGTCTGAAACCTCAGGTAACGCTGAACAAGCACAATGTctttaacttaaataaaataaacatttacaataaatgaaaacTCAATTAAACTAACAACAGTCACTAAAaacaagctgaaataaaatacaataaattacaataaattaaaaactaaatataaatactaACAGTCAcagaaaaaaactgctgaaattatatttaaaaattacaatattaacaactaaactaaaataaaacgaATAGTCACAGAAaaactgactaaaataaaataaaacatttaaaactaaaacaaaaaactgtAAGCTCACTGAAAAAGTGGAGTTAACCAAA

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0006508 proteolysis biological_process
GO:0140096 catalytic activity, acting on a protein molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194860

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005635 lncRNA downstream 15377 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005608 lncRNA downstream 728297 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 728313 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00006134 lncRNA downstream 728437 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 772265 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006135 lncRNA upstream 105033 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 218034 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 218034 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006136 lncRNA upstream 698351 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 771344 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00005634 mRNA downstream 27362 44239844 ~ 44241119 (-) True XLOC_003074
TCONS_00005633 mRNA downstream 241090 44021224 ~ 44027391 (-) True XLOC_003073
TCONS_00005632 mRNA downstream 242112 44021147 ~ 44026369 (-) False XLOC_003073
TCONS_00005630 mRNA downstream 250839 44008288 ~ 44017642 (-) False XLOC_003072
TCONS_00005628 mRNA downstream 260240 43999266 ~ 44008241 (-) False XLOC_003072
TCONS_00005637 mRNA upstream 20978 44296863 ~ 44341288 (-) True XLOC_003077
TCONS_00005638 mRNA upstream 26335 44302220 ~ 44305180 (-) False XLOC_003078
TCONS_00005639 mRNA upstream 26335 44302220 ~ 44306399 (-) False XLOC_003078
TCONS_00005640 mRNA upstream 26335 44302220 ~ 44306636 (-) True XLOC_003078
TCONS_00005641 mRNA upstream 34112 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005629 other downstream 250816 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 252742 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 435813 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 508949 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 509002 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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