RNA id: TCONS_00005638


Basic Information

Item Value
RNA id TCONS_00005638
length 348
RNA type mRNA
GC content 0.57
exon number 4
gene id XLOC_003078
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44302220 ~ 44306636 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTCTCTCCTTCCTCCGGTCGCTGATCTTCAGGTGAGTCCACTctcaatgtgtgtgtgcaggaaacCCTCCTCTGCGTCCTCCATGGCATCAGTTCAGTCTTATAAACCCATCCTGAATGACTTCGGTCCTCCTTCACTGGGCTTCcctcagGGTCCGAATGGTGGTCAGGTTCCTCAGAGTAAATATGCGGAGCTGCTGGCCATCATAGAGGAGCTGGGCAAGGAGATCAGACCCACATATGCCGGCAGTAAAAGCGCCATGGAGCGACTgaagagagGCATCATTCACGCCCGGGGGCTGGTGCGCGAGTGTCTGGCAGAGACAGAGAGGAACGCCCGGTCCTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005636 lncRNA downstream 26335 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 49116 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005608 lncRNA downstream 762036 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006134 lncRNA downstream 762176 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006133 lncRNA downstream 806004 43484627 ~ 43496216 (-) True XLOC_003063
TCONS_00006135 lncRNA upstream 75738 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005646 lncRNA upstream 188739 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 188739 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006136 lncRNA upstream 669056 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 742049 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00005634 mRNA downstream 61101 44239844 ~ 44241119 (-) True XLOC_003074
TCONS_00005633 mRNA downstream 274829 44021224 ~ 44027391 (-) True XLOC_003073
TCONS_00005632 mRNA downstream 275851 44021147 ~ 44026369 (-) False XLOC_003073
TCONS_00005630 mRNA downstream 284578 44008288 ~ 44017642 (-) False XLOC_003072
TCONS_00005628 mRNA downstream 293979 43999266 ~ 44008241 (-) False XLOC_003072
TCONS_00005641 mRNA upstream 4817 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005642 mRNA upstream 103495 44408675 ~ 44411032 (-) True XLOC_003081
TCONS_00005643 mRNA upstream 157267 44462447 ~ 44467384 (-) True XLOC_003082
TCONS_00005644 mRNA upstream 168671 44473851 ~ 44482911 (-) True XLOC_003083
TCONS_00005647 mRNA upstream 198639 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005629 other downstream 284555 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 286481 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 469552 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 542688 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 542741 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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