RNA id: TCONS_00006135


Basic Information

Item Value
RNA id TCONS_00006135
length 3780
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_003080
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44380918 ~ 44387802 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAGCTGAGTTTAAAAGCTGATTTTAGAGGAAAATATGGAGGTGTTTGCATCTGAGCTCTTCATATGTTCTGTGGGTGGGAGTGCTTGTGTTTTGAGTGTCATGAAGCAGACACATCTGACATTATTAAGATTAATTAAAGATTAATTGATCATTACAATAAATGATGATCGATCACTGGAGTTTTGTGACATCTCTGATATATCCCTCTGACAGGATCTTCACCGCCATCATGCCTATGGTGGCTGCTGGGTTGATTGCAGATGACCCCACTCTCCAGCCAATCAGACGCCTCATTTCTCTCgtttaGCTTCTTCTCGCGGGACAGGAGTGTTTCTCAGCGGAGGATGATGCTGAATGTGGAGCCGGTGGGCGACGCGGTGGGCTCATGGACTGGGAAACAGGAGGAACACACGCCCGCTTCACTAACTGCACACGTATCACACTCCACCTGCCTCTgtgtccctgtgtgtgtgtgataatagACCGCATCCTGCTGTTACTGTACGCAGACTcttcagtacacacacacacacacacacacacacacacagctgctttTAGTTCAAATTGAATTATGATGGAAAGATGAAGGAtgaattagtgttattattacgtTTTTTTAATGTCAAGGCCAGAGATAGTTTTAAAAGAAAAGCTGGTGGCATTACATGAAGAACACACACCGTgcgggaaacactcacacacacattcacccaACGCTGAGGTGAAGCTGACCATGACGTCGCTATTGACACTAAATCACCTGCTTCAGTTTATGAAAAATAAGAGTATTAATATTATAACATCACTACAGAATCCAAGCTGGTGTAAAACATTCACAAGTCATTGTCTGTGCTTTACTGGAGCTGCACAAATACATATTGACACATTTATACAGCATACCGATAATACTAACTATATATATGCTcagtgttcagcataaatgagcacacctcttttaaaattatgcatttctcagtgaatatagacaatatatttcagtgcatttaaagaaatcatttttattaatcagttatatccattaaaataagagtttgctcactgaacatctttaggaATCGAAAGATCATACGTTTACAGATTTCAactgaacatgatatttttaatGTGCTTCTTGATTTTTGGAAGTGTTGTTGTTAGATGAGTTGATCAGTTttgtctttggtactgactaatctactgTCTCTGCACAGATATATTACTGTAGAGCATCCTGGAGAAATTATTACAGTATGAGAAacactcaattatgctgagcactaaatatatatatatataatctttgtgCAATATGTGCATTTGTCAAAGCCAAAACATGAGCACTTAGCAAAGTTTGGGTGTTTGCGTAGATCCTGCACTTTACTTTTGTCCTCAAGGGTTTTAAGGAAGATCACAGCTTTAGTATTGAATGTGCATTGGCCTGCTGCAGACGTTCACACACTTCATTTCAGCTCAGCGTTAGCACTAGCACTAGATGGATTTACAGAATCATCGTCAATGCAGCATTTCAATCATAGACGTGCCTTTTAAAGTCTTTGTTTGATGGAAAActctatatttttttctaaagtaaATAGTATTTTTGTTCTAGAAGAGGTTTCCCTTTAAAACTCCCCGATGCCACATTTACCTGATCACAAATACAGTAGAAACTGAGGTGGTCTTACATTTAAAGATGTAAGCTGTTTATTAAATGAACATACAGTACTATAAACACTGAATTTCAGTCACGTTTAGAAATCTGTTTTAAATGAGGATTTGATGATCAAGACAGCGTTATGAGGATTATTATCAGTCTTTAAAGATCAAAACCACAGCATTtgtttatagaggtaaagttggttttatattcacacattcattcatttagaatcTCTAGATTGTTTACCATGTTATGTTGAACATTCGATtgaaattagcatgcaagtatgactttaaaacagcattaacactatcttattcactgtgaacaatgttgtactttgatagtcatttgctgctaatatgatttccctatttagaatttgcaaagaatacttttctgaaattattttattaaggaGATTGTCTGAATAtgcgaatattaaaccaactttacccctatCATTTGTTTCAAATCTTTTGAAAGGTTTTACAGCTTTGATCATTGCTGGATAAAAGAGTCAGTTTAAAAGTTCCATACATTCAAAAGTATCAGTTTAAATGTATCAGTTTAAAAGTTCCATACTTTTAaatgtataagttataaagtatgGATTTAAAAAGTATCGGTTCAAAGGTTTGATGCTTTTTAAATGTATCACTTTAGAAGTGTCAGTTTAACAGTataaattttaaaagtattgGTTTAAAAGTTTGGTACTTTTTAATGTATCGATTTAAAAGtatcagtttaaaaaaatttgGTTTAAAAGTATCAGTTTAAAAGTTTGATACTTTTAAATGTATCGGTTTTAAAGTATCGATTTGAAAAGTATTGGTTTAAAGTTTGATACTTTAAAAAGTATTGGTTTAAAAGTGCCAGTTACTTTCAGATTTTTGAGCTAGTTTTGAACTTTAACATTACATTTGTGACCCTGGagcaacaaactaaataaataatctttCTATTGGTGAATTGTTTATGATGGACAATATTTGACTGGGATAAAATTATtagaaaatctgaaaaaaatctaaatatttagaaaatcatTTTTACGGTTGATCAAATTccattcttagcaatgcatatttctaatcAACAGTGAAGTTTTGAtctatttacagtaggaaatgtacaaaatgtcttcatgaagTGTGATCTTTACTTGAATGATTTTTGGTATTAAAGATAAATCCATCATTTTGGCTGATTGAGTGTTTTGTCGGCTGTTGCTACAAATACACCTGTGCAATATATGACTATGTTTGTGCTCCAGGGTCATATTTTATTGCCAGTATGATCTAAAGTCAGAGTTGACTGCAACTGTAAATGAGTGATGAGTGAAGCTGAACAACACATGCACAACTCCTCACACTGTAAATCTACTGTACTCATTTTCTCAACATCTTCACATTCTAAACACTAGATATTTATTCGCCTTCCTGTGAaattgaatttatatatatttctgaaatGCTGTCTGACATTATTTTGAAGACATTTTtcaaacataatagctttaataactcctttctaataaatCATTTCATTTCTCTTTGGCATGAGGACAGCCCATAATAGTTTACTAGATTTTTTCAGGATACTTGTAttcggcttaaagtgacatttaaaggcttaagaaTCAATTTCTTAATGGGGTTAAAAATATTGACCACAGTTATTTTTACAAAACTTTATATTAGCCAAAAACTTTCCCCGGAAAAAGaaatataggaaatattgtgaaaaatgtccttgctctgttaaacagcgcttgggaaatataaaaaataaataaatgttcacagGAAGGTGTATAATTTCTGCAGTATTAATAATCCATCATGTCCTGCTGAAGCAATAAGGTTTAGTAATAATAATGGTGAAAGCATGAGCGTGTGGGTTTGATGCCGCTGGGCTTTATTTGAACTGTTAGAAATGAACTCCAGAACTGAGATTAATCCAGATGTATTGTCATGAAGGATTATGCATAACTCATCTCATTGTGTATTAAACTATTTTATACCATATTCTGTCTCAAATCGTGCTCTTTATTTGTAATATGCTGATTTATTGAAACATGAATACAGTTACTGGAATTACAAGGTAAA

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0042330 taxis biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0031175 neuron projection development biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0102343 3-hydroxy-arachidoyl-CoA dehydratase activity molecular_function
GO:0102344 3-hydroxy-behenoyl-CoA dehydratase activity molecular_function
GO:0102345 3-hydroxy-lignoceroyl-CoA dehydratase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005636 lncRNA downstream 105033 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 127814 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005608 lncRNA downstream 840734 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006132 lncRNA downstream 840750 43453171 ~ 43540168 (-) False XLOC_003062
TCONS_00005646 lncRNA upstream 106117 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 106117 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006136 lncRNA upstream 586434 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 659427 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 660713 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00005641 mRNA downstream 25384 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005637 mRNA downstream 39630 44296863 ~ 44341288 (-) True XLOC_003077
TCONS_00005640 mRNA downstream 74282 44302220 ~ 44306636 (-) True XLOC_003078
TCONS_00005639 mRNA downstream 74519 44302220 ~ 44306399 (-) False XLOC_003078
TCONS_00005638 mRNA downstream 75738 44302220 ~ 44305180 (-) False XLOC_003078
TCONS_00005642 mRNA upstream 20873 44408675 ~ 44411032 (-) True XLOC_003081
TCONS_00005643 mRNA upstream 74645 44462447 ~ 44467384 (-) True XLOC_003082
TCONS_00005644 mRNA upstream 86049 44473851 ~ 44482911 (-) True XLOC_003083
TCONS_00005647 mRNA upstream 116017 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005648 mRNA upstream 125429 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005629 other downstream 363253 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 365179 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 548250 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 621386 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 621439 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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