RNA id: TCONS_00005644


Basic Information

Item Value
RNA id TCONS_00005644
length 1523
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_003083
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44473851 ~ 44482911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGACATCACAGGTGAAGTTCTGGACTACATGGAAGCGGGTCTGAAACTGCAGGAAACAGTTTTCCGTCAGATGGATTCCCACTCCACCAGCTCCACCACAGCTGTGGGTCAGTGTCGTCTGGCTCCGCTGGTTCTGCTCATCCAGGATTCTGGTCCGCTTTATCATTTCCTGGTCAAGCTGCTGTTCAAGCTGCACAGCCgaatACCGGTGGACGCTCTGTTAGGACACAGAGACCGATTCCGCGATCACTTCAACAGTTTGACAGAGTTTTTCGAGAGAGCGAGGGGAATCGAGTTCTTCAAAACCATCATTCAGATCCCTGATCTGCCCAACgaGCCTCCAAATTTCCTGCGTGCGGCGTCGCTGGCGGATCATGTGAAGCCGGTGGTCGTCCAGAATGAGAGATTTGTTTATGATGACGAAACCGAGACGCAGGCGGACTTCAGTGAAGGACAGTTTCAGCCGTATTATGGGTTCAACCAGTTTGATTATCCAGTCGATGTACCGGAGCAAAGAGAGACGGAGGCTGATTCCCTGAGGAAGGAGCTGGAGGTGGTGAAGCCGGAGCTGGAGCTCATCAAAGTGGAGgcccaGCGCGCCGTCGTGCAGCTCAAATCTCAGGTGAATAAGCTGGAGTCGGAGTTGGAGGAGCAGCGGACGCACAAGCAGATGGCGCTGGTGGAGAACGAGAGGCTGCGCATGCAGGTGGAGAACATGAGGATGGAGAACACAGCCAGCGTACAGGCCACAGTGGAGGACCACAgcaACCGAGCGCAGACGGCTCAGATTCACTTCGCTCGACTCAAAGAGAAACACGCGGAGCTGGTCAGCAGACACGCAGATCTCATGCGCAAGAATGCAGAGATGCTGAAGCAGAAGAGCAGCGGTCAGCAGGCGCAGGAAGAGCTTCTGGCCTACAGACAGCAGGTGGCGCAGGAGATGCAGCAGCTCACACTGGACAACAACAGCAAGCTGGAGGCCCAGAGAGCAGAAATTGAGCGTCTGAAGCAGGAGTTGGTGAGCGGCAGAGCTGAAGTTTCTCAAGTCCATAATGCACTGCAGAGCAAGGAGAAGGTGAGCGTGCGCATGTCATTGTGTGTGATTGTCTGTGTGGCACTTTGTTGGAAAATTAAATGTCCTAGGTACTATTAAGAAAACACGTCTactcaaaatacaacacacacTGGGGGATTGAAAACACTTAAGGGCCCATTTCTCGgttcatttgacaagtgtgagtgctctgaatcgggctcaggcgtgGTTCAGTTTGCCGGTCCTGGCCCGGTCGGAAGAGGTGGTCCAGAGCACTAAACCCTATTGAAGAGTTGCTTTTCCGCTTGGAGATGGCGTGAATCCCAGCACACACATTTGGCTTGTTTTTCTGTGTGTACAGTAGTGTGAAACACTGATTATGTAGAGTACAAAGTTTAGCAAACATCGCTCAAGCAGCAGACAGAAACTCTGATAATCCTTCATCATGATTATTTTTGCAGATTAAATGTTATTTCACAAAAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000085556

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006135 lncRNA downstream 86049 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005636 lncRNA downstream 197966 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 220747 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005608 lncRNA downstream 933667 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006134 lncRNA downstream 933807 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00005646 lncRNA upstream 11008 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA upstream 11008 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006136 lncRNA upstream 491325 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 564318 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 565604 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00005643 mRNA downstream 6467 44462447 ~ 44467384 (-) True XLOC_003082
TCONS_00005642 mRNA downstream 62819 44408675 ~ 44411032 (-) True XLOC_003081
TCONS_00005641 mRNA downstream 118317 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005640 mRNA downstream 167215 44302220 ~ 44306636 (-) True XLOC_003078
TCONS_00005639 mRNA downstream 167452 44302220 ~ 44306399 (-) False XLOC_003078
TCONS_00005647 mRNA upstream 20908 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005648 mRNA upstream 30320 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005649 mRNA upstream 69637 44552548 ~ 44560165 (-) False XLOC_003087
TCONS_00005650 mRNA upstream 70798 44553709 ~ 44560302 (-) True XLOC_003087
TCONS_00005651 mRNA upstream 286139 44769050 ~ 44788554 (-) True XLOC_003088
TCONS_00005629 other downstream 456186 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 458112 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 641183 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 714319 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 714372 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000177_00061966_00080120.mRNA True 3330 mRNA 0.51 30 CI01000177 61966 ~ 80120 (+)