RNA id: TCONS_00005645


Basic Information

Item Value
RNA id TCONS_00005645
length 1847
lncRNA type lincRNA
GC content 0.44
exon number 6
gene id XLOC_003084
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44493919 ~ 44501719 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaaattatgttattttactgcaaaaaaatgcttttgttatttagagttttgtcttgtttctaatccaaatatctacaaactcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCTATACGCCTGCATGCAGACTATTGTttatatggtgtgtgtgtgtgtttgaggctgGAGATCAGCTGAGCAGTGTGTTAGTGGGTCTGCAGGCTGAGAAGGATGTTCTGCTGCGCTCAGTGAAGGATCAGGAGTCTGACATCATGAGTCTCCGTCAGACACTCCAGAACCAGCAGAGCAGTCTCCAGCAGGAGAGAGAGAAACACCAGAGGGAGAGCGCAGAGCTGCACACACACCTGCAGAGCAAGgtgagTCAGGACTCAGGTGTGTGGCAGCAGAAGCTCCAGGATGAGCAGTTCAGTCTCCTGCAGTGTGCGGTGGTGGAGGCCGAGGGCATCGTTCTGGACGCAGTGGCCAAAGTGGACGATCCTCTGCACGTGCGCTGCATCAGCACTCCAGATTACCTGATCAATCGTGCCGAGCTCACGCTGGCCTCTGTTGATAAGATGCAGCGCAGTCATGCGGCCTACATCAGGAACATGGACGGTTTGACGGATAACTGCCGTGACTGCGCCACTCACTGTCTGCAGTACCTGAAGGAGCTGAAGCTGAAGGCCACGCTGCCCAGAGCAGACCCCACCGCTGTCAGATGCGTCCTGCAGCGCATCCTGCACCAGGGACAGGATCTTCGTCCGAGAGCAGCAGACGTGCGTCAGGAGGAGCTGGCTGATATGGTGGATAAGGAGATGTCTGCCACCTCCTCTGCTATTGAAGACGCGGTGCTGAGAATGGAGGAAATACTGAACCAGACGAGAAGAGAAACGACTGGAGTCAAGCTGGAGGTCAACCAGAGGTCAGTTTGGGGAATCAGTTAGTAATCCAACATGAACAAATATTATAGAACAACAACAAATCAGAAAGAGTTgagaaaacagaaataaataaagaaagaagtgatttctgagtttactttgacttgtgtttCATTGCAGAGAACAGAACAAACATtattaatgtgttcctcatgattatTTCTTAATAAACACGTATTACAGTTTTAGTTCttccaacacatttcaaaaaaggtTGGAgtagtaaagcatttaccactgtGTTGCCATTGCTGTTCCTTTTCACAATACTTAAAAGaggtttagggactgaagacaccaagtgatggagtgtttcaggtgtaattttgtgcCATTCTTCCTACAAACAAGTCTTAACAACTTAACAACAATACGGGGACTTCATTGTTGCATTTTGCGCatcaaaatgcgccacacattctctactGGAGACAgatcaggactgcaggcaggccagtccagtacctgtatcctcttcctccacagcagGACTCTGTAATAGCCGctttcacacatgcagacctttTCAGAAAATTACTGTTAATTCTACAGAAGgtgatcatgtgtgaacaggccctttatgaaaataccggtaaatttgttctgggaatcttccggaaagagaagttgtaacattaccggtaatttgccggaggctgcgctgtgtgaacgctgAAGGAAAAAATAGCCGGAAAGAGCACGTTCACGATTAGAACAcgctgatgtgagacgtctactccagccaatcagaaccctCACGCATTTACATccgcactgttttttttttaggggttttcacctttattgataggacagaggagatatagagacaggaaagtgtggggagc

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194178

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006135 lncRNA downstream 106117 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005636 lncRNA downstream 218034 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 240815 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00005608 lncRNA downstream 953735 43499529 ~ 43540184 (-) True XLOC_003062
TCONS_00006134 lncRNA downstream 953875 43499529 ~ 43540044 (-) False XLOC_003062
TCONS_00006136 lncRNA upstream 472517 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 545510 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 546796 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00006139 lncRNA upstream 853905 45355624 ~ 45357482 (-) True XLOC_003097
TCONS_00005644 mRNA downstream 11008 44473851 ~ 44482911 (-) True XLOC_003083
TCONS_00005643 mRNA downstream 26535 44462447 ~ 44467384 (-) True XLOC_003082
TCONS_00005642 mRNA downstream 82887 44408675 ~ 44411032 (-) True XLOC_003081
TCONS_00005641 mRNA downstream 138385 44309997 ~ 44355534 (-) True XLOC_003079
TCONS_00005640 mRNA downstream 187283 44302220 ~ 44306636 (-) True XLOC_003078
TCONS_00005647 mRNA upstream 2100 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005648 mRNA upstream 11512 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005649 mRNA upstream 50829 44552548 ~ 44560165 (-) False XLOC_003087
TCONS_00005650 mRNA upstream 51990 44553709 ~ 44560302 (-) True XLOC_003087
TCONS_00005651 mRNA upstream 267331 44769050 ~ 44788554 (-) True XLOC_003088
TCONS_00005629 other downstream 476254 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 478180 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 661251 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 734387 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 734440 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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