RNA id: TCONS_00008380


Basic Information

Item Value
RNA id TCONS_00008380
length 512
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_003140
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2308209 ~ 2320355 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATGCAACTGCTCTGTGCGACGGTTAGTCCTAGAAACTACAATGTACCAACACAGAAAACAATTCATGGCATTGGTTGTGGGAGCACTGTTTAAGCTACATGCAGAAACCTGCCCGGAAAATGAGTTCCAGGTTGAAGGATCAGTCTGCTGCGAGGTCTGCCGTGAAGGTTAGACATGCTCAAATATAATAATTACACATAAAAATTCAAACCAACACTtcaaaaccaaaacaataataatcattcaaTGCAAATCTACAGGTTATTATGTGGCCCAAAACTGCTCGAACAGATCTGGTCGATACTATGGTGTGCAATGCATTCTGTGCAGCAAATGTGAAGGTATGCAAGCCTGTGATTAATAGAGATTGTGTAACAAAAGTGTCACTTCATGTTCTGGAGAAACCGCTTTTTTTTAACCTGCAGGTGCTGCACTTGTGTCAAACTGCACCCTGTTCTCTAATACACAGTGCGGATCACCAGGGATTGAAGgtgAACTGCCACGGATAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0048675 axon extension biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0007409 axonogenesis biological_process
GO:0060560 developmental growth involved in morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0044297 cell body cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008379 lncRNA upstream 102420 2198677 ~ 2205798 (+) False XLOC_003139
TCONS_00006201 lncRNA upstream 103674 2202987 ~ 2204544 (+) False XLOC_003139
TCONS_00008512 lncRNA upstream 107325 2198530 ~ 2200893 (+) False XLOC_003139
TCONS_00006193 lncRNA upstream 352065 1935893 ~ 1956153 (+) True XLOC_003132
TCONS_00008378 lncRNA upstream 355624 1951631 ~ 1952594 (+) True XLOC_003133
TCONS_00006213 lncRNA downstream 300284 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00006224 lncRNA downstream 395771 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 512767 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 615393 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 888701 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00006200 mRNA upstream 103464 2198831 ~ 2204754 (+) False XLOC_003139
TCONS_00006202 mRNA upstream 103464 2202987 ~ 2204754 (+) True XLOC_003139
TCONS_00006198 mRNA upstream 123044 2180072 ~ 2185174 (+) False XLOC_003137
TCONS_00006197 mRNA upstream 123044 2180072 ~ 2185174 (+) True XLOC_003137
TCONS_00006196 mRNA upstream 133185 2172335 ~ 2175033 (+) True XLOC_003136
TCONS_00006203 mRNA downstream 76683 2391469 ~ 2397974 (+) True XLOC_003141
TCONS_00006204 mRNA downstream 84057 2398843 ~ 2413107 (+) True XLOC_003142
TCONS_00006205 mRNA downstream 101278 2416064 ~ 2429303 (+) True XLOC_003143
TCONS_00006206 mRNA downstream 119476 2434262 ~ 2446346 (+) True XLOC_003144
TCONS_00006207 mRNA downstream 143478 2458264 ~ 2466879 (+) True XLOC_003145
TCONS_00006199 other upstream 117488 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 761987 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 778891 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1577295 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 1936778 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006215 other downstream 319005 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 430278 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 861900 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 1184404 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1650941 3965727 ~ 3968309 (+) True XLOC_003171