RNA id: TCONS_00006205


Basic Information

Item Value
RNA id TCONS_00006205
length 1191
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_003143
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2416064 ~ 2429303 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGATGACTAATATCAGCGCACTATATTGAACTTCAATTTCCAGGTTCACCGATTATTTCATGCATAATTCATGAGGCGATTGTTCACTGTTGGCGCGTCCCCGCTGCTGAGCAACAAGATGGCGGCCGCCGCCGGATCAGGCGTGAAAGTCCCCCGTAACTTCCGGCTGCTGGAGGAGCTTGAGGAGGGTCAGAAGGGTGTTGGAGACGGGACAGTGAGCTGGGGTCTGGAAGACGATGAGGACATGACCCTCACACGCTGGAGAGGAATGATCATCGGGCCCCCGAGGACCATCTATGAGAACAGGATGTACAGCCTCAGAGTAGAATGTGGACCAAGATATCCAGAAACGCCCCCTTTTGTCCGTTTTGTGACGAAGATCAACTTGAATGGAGTGCATAACTCCAATGGTGTGGTTGACATGCGCGCTGTATCCTCATTGGCCAAGTGGCAGAACTCGTACAGCATCCGCGTGGTCCTGCAGGAGCTGCGACGACTGATGATGTGCAAAGAAAACATGAAGCTGCCGCAGCCTCCTGAAGGACAGATCTACAGCAACTGAGCTTCttctcctccctctctctctttctctctctctctctctttctttctctctctctacctTCATCCACAACAAAGTCACACACGCAAGGCTGAgcattcctcctcctcctcctctttctggACTCATGAGATATCCTCCGTTCTCCTCTGTTCCTGACACTCCCCCACGTGCTGCAGCAGCCAATGAGCAGTCCTGCCTCCGGGAGCTCCCATTGGACAGAAACCATGGATGTAGTGGTGTGCACAGCAGAATACTGTACATCATtctaatctctttttttttaaatgtttatttgttatacatgcaaaattgtaaaaataacaaatgatCTTATTGAGTGTAATCTGTGTGCCCTCATTTGAGAATTAGTTCATGCAAGTGTAAATGAATTTGTGCCATCGTGTAACATGCTGTGTGGTGGGAATATTTAGATTCATATTTCTTGTTTCCTTTCATTTTTcctattgatgatgatgatgatactgcAGTCAGCAGTTCAGACTGTTTAGTCTCTGGCCTGAGCATTTTAGagttgctcattttatttttaagcagtCTTTTTCAGTTTTGAAGGTTTTCTGAAATTGCTTTACATCCAAGATCAAAACACTTTAATTTCCTC

Function

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0035370 UBC13-UEV1A complex cellular_component
GO:0005634 nucleus cellular_component
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-102 Acts upstream of or within protein K63-linked ubiquitination. Part of UBC13-UEV1A complex. Orthologous to human UBE2V1 (ubiquitin conjugating enzyme E2 V1).

Ensembl:

ensembl_id ENSDART00000067117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008515 lncRNA upstream 95709 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 95709 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 101278 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 102919 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00008379 lncRNA upstream 210266 2198677 ~ 2205798 (+) False XLOC_003139
TCONS_00006213 lncRNA downstream 185767 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00006224 lncRNA downstream 281254 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 398250 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 500876 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 774184 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00006204 mRNA upstream 2957 2398843 ~ 2413107 (+) True XLOC_003142
TCONS_00006203 mRNA upstream 18090 2391469 ~ 2397974 (+) True XLOC_003141
TCONS_00006200 mRNA upstream 211310 2198831 ~ 2204754 (+) False XLOC_003139
TCONS_00006202 mRNA upstream 211310 2202987 ~ 2204754 (+) True XLOC_003139
TCONS_00006198 mRNA upstream 230890 2180072 ~ 2185174 (+) False XLOC_003137
TCONS_00006206 mRNA downstream 4959 2434262 ~ 2446346 (+) True XLOC_003144
TCONS_00006207 mRNA downstream 28961 2458264 ~ 2466879 (+) True XLOC_003145
TCONS_00006209 mRNA downstream 77213 2506516 ~ 2513093 (+) False XLOC_003146
TCONS_00006208 mRNA downstream 77213 2506516 ~ 2513093 (+) True XLOC_003146
TCONS_00006210 mRNA downstream 125553 2554856 ~ 2566692 (+) True XLOC_003147
TCONS_00006199 other upstream 225334 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 869833 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 886737 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1685141 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 2044624 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006215 other downstream 204488 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 315761 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 747383 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 1069887 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1536424 3965727 ~ 3968309 (+) True XLOC_003171

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_01510783_01522965.mRNA True 1247 mRNA 0.44 4 CI01000057 1510783 ~ 1523768 (+)