RNA id: TCONS_00006213


Basic Information

Item Value
RNA id TCONS_00006213
length 575
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_003149
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2615070 ~ 2616023 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGAATTGAATCGTTTGAATGTTTATTTAATCAAACGCTATGCCTGCGCAACGAATCATTTGACCGATTCAGTTCACGTTATTTGTTCCTCCATGTATTTGATCTCTAATGTTGAAATAGAGACTCCATTGTCCATTATATTCACAGTGAGCAAAATAAACCATGAGTGAAATCACAGAAATCAAATATCTGAAATGATTTAAAAgtttaaacattttcttttccgctCAGGAATCATCTTGAAAGACTCATTTGCCGGAGCGACTCTTTCTCTCCGAATCTACAGGTTCTTGTCCGTTTTAAACTCATGACTTCACTCACTATTTAATTTACAATCCACCTCATATGCTTTGAAACACAGACTGCTTTCCCTCTGTACAGCTGAACATAAAACTGTTCACACAAACCTGTTGCTGACTTTCAGTTCAAGCGCTTGTTTAACGCCGGACCTTAAAGCAAATGATCGATTTCATGAATTAAAGGATTTTAAAAGACTTCAGAAGATGGCAGAttgttgttttctctttttcctcaatcagggtttctgcggggtcttaaaatgtcttaaacctC

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0021548 pons development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0061448 connective tissue development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0051216 cartilage development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048857 neural nucleus development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0007369 gastrulation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0030903 notochord development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005104 fibroblast growth factor receptor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008515 lncRNA upstream 294715 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 294715 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 300284 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 301925 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00008379 lncRNA upstream 409272 2198677 ~ 2205798 (+) False XLOC_003139
TCONS_00006224 lncRNA downstream 94534 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 211530 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 314156 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 587464 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 715090 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006212 mRNA upstream 5246 2600612 ~ 2609824 (+) True XLOC_003148
TCONS_00006211 mRNA upstream 5559 2596667 ~ 2609511 (+) False XLOC_003148
TCONS_00006210 mRNA upstream 48378 2554856 ~ 2566692 (+) True XLOC_003147
TCONS_00006209 mRNA upstream 101977 2506516 ~ 2513093 (+) False XLOC_003146
TCONS_00006208 mRNA upstream 101977 2506516 ~ 2513093 (+) True XLOC_003146
TCONS_00006214 mRNA downstream 17720 2633743 ~ 2641308 (+) False XLOC_003150
TCONS_00006216 mRNA downstream 25990 2642013 ~ 2649496 (+) True XLOC_003150
TCONS_00006217 mRNA downstream 33641 2649664 ~ 2684595 (+) False XLOC_003151
TCONS_00006218 mRNA downstream 33868 2649891 ~ 2683979 (+) True XLOC_003151
TCONS_00006219 mRNA downstream 69089 2685112 ~ 2690933 (+) False XLOC_003152
TCONS_00006199 other upstream 424340 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1068839 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1085743 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1884147 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 2243630 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006215 other downstream 17768 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 129041 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 560663 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 883167 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1349704 3965727 ~ 3968309 (+) True XLOC_003171

Expression Profile

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